PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J565900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 292aa    MW: 32227.1 Da    PI: 8.4809
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J565900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3703.3e-113229077374
               GRAS  77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                        +l++++++++++P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+     + +++etg+ La++
  Pavir.J565900.1.p   2 TLKIYQILYQACPYVKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PAAAVRETGRHLASL 89 
                        57899********************************************************************....88************* PP

               GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                        A++l+vpfef++ va+rle l++ +L+ + gEalaVn v +lhr++   v+l      +L+++++  Pk++++veqea hn++ Fl rflea
  Pavir.J565900.1.p  90 AASLRVPFEFHAAVADRLERLRPAALQRRVGEALAVNAVNRLHRVP--GVHLGP----LLSMIRDQAPKIMTLVEQEAGHNGPYFLGRFLEA 175
                        *********************************************9..666666....********************************** PP

               GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                        l+yysa+fdsl+a++p++s  r kvE+ ll++ei+nvvacegaer++rhe+l +Wr+ +e  GF+pv+ls  a+ q + ll  ++ +dgyr+
  Pavir.J565900.1.p 176 LHYYSAIFDSLDATFPADSAPRLKVEQCLLAPEIRNVVACEGAERVARHERLDRWRRLMEGRGFEPVRLSPAAVGQSQVLLGLYGaGDGYRL 267
                        ******************************************************************************************** PP

               GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                         e++g+l+lgW+dr+++++SaWr
  Pavir.J565900.1.p 268 TEDKGCLLLGWQDRAIIAASAWR 290
                        **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.9821269IPR005202Transcription factor GRAS
PfamPF035141.1E-1102290IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
DTLKIYQILY QACPYVKFAH FTANQAIFEA FHGEDRVHVV DLDILQGYQW PAFLQALAAR  60
PGGPPTLRLT GVGHPAAAVR ETGRHLASLA ASLRVPFEFH AAVADRLERL RPAALQRRVG  120
EALAVNAVNR LHRVPGVHLG PLLSMIRDQA PKIMTLVEQE AGHNGPYFLG RFLEALHYYS  180
AIFDSLDATF PADSAPRLKV EQCLLAPEIR NVVACEGAER VARHERLDRW RRLMEGRGFE  240
PVRLSPAAVG QSQVLLGLYG AGDGYRLTED KGCLLLGWQD RAIIAASAWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-77628998377Protein SCARECROW
5b3h_D3e-77628998377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J565900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363770.0AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377590.0AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828284.10.0DELLA protein RGL1-like
SwissprotG7L1661e-166RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A1Z5RI770.0A0A1Z5RI77_SORBI; Uncharacterized protein
TrEMBLA0A2T8I9E30.0A0A2T8I9E3_9POAL; Uncharacterized protein
STRINGPavir.J25769.1.p0.0(Panicum virgatum)
STRINGSb05g018070.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-95RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]