PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J549100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 214aa MW: 23767.1 Da PI: 7.1005 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 218.6 | 3.2e-67 | 2 | 212 | 159 | 374 |
GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 +++g+ L+ +Ae lg+ +ef++ v ++le+l++++L ++ +Ea+a+n++l+lh +++es + +vL+++++lsPk +v+veq+a hn+ Pavir.J549100.1.p 2 RAVGRELEAYAEGLGMYLEFRA-VDRSLESLHIDDLGIDADEAVAINSILELHCVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNG 89 789*******************.799******************************88877777...8************************ PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 + Fl rf+eal+yy+a+fd+l+a lpr + r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++ + a+ l+ Pavir.J549100.1.p 90 PFFLGRFMEALHYYAAVFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIRMA--ARAREWLE 179 *******************************************************************************865..56788888 PP GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + + gy+v ee+g+lvlgWk++p++++S+W+ Pavir.J549100.1.p 180 ENAgGGGYTVAEEKGCLVLGWKGKPVIAASCWK 212 8887999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 33.714 | 1 | 193 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-64 | 2 | 212 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MRAVGRELEA YAEGLGMYLE FRAVDRSLES LHIDDLGIDA DEAVAINSIL ELHCVVKESR 60 GALNSVLQTI RKLSPKAFVL VEQDAGHNGP FFLGRFMEAL HYYAAVFDAL DAALPRYDAR 120 RARVEQFHFG AEIRNVVGCE GAARVERHER ADQWRRRMSR AGFQSVPIRM AARAREWLEE 180 NAGGGGYTVA EEKGCLVLGW KGKPVIAASC WKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-30 | 1 | 211 | 172 | 378 | Protein SCARECROW |
5b3h_A | 7e-30 | 1 | 211 | 171 | 377 | Protein SCARECROW |
5b3h_D | 7e-30 | 1 | 211 | 171 | 377 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J549100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003791 | 0.0 | AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12. | |||
GenBank | AP006757 | 0.0 | AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814052.1 | 1e-149 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2T7DCV4 | 1e-148 | A0A2T7DCV4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J09064.1.p | 1e-154 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-46 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J549100.1.p |