PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J504700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 707aa MW: 74666.9 Da PI: 6.8368

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J504700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.2	1.7e-19	537	633	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++r+W++++++ ++ks++y+l+ ++ eFv++n+L+egDf+v++ ++ Pavir.J504700.1.p 537 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--SDv 625 79***********************999*******7778***99777777777777.******************..555 PP SEE..EEE CS B3 88 sefelvvk 95 ++++++++ Pavir.J504700.1.p 626 KSGKYLIR 633 88877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-27	530	641	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10015	1.02E-31	534	635	No hit	No description
SuperFamily	SSF101936	3.14E-22	535	631	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.3E-18	536	638	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.532	536	638	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.3E-16	537	632	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MDACAGSSPP HSQENPPERG GDLGEAPAEE IGGEAADDFL FAEDTFPSLP DFPCLSSPSS 60 STFSSSSSSN SSCAYTTAAG GAGGGGGGGA DGAAGERSGP ASAGEGFDAL DDIDQLLDFA 120 SLSMPWDSEP TFPEVSMKLE DAMFAPPHPV GEGRREGKAV LEGTGGEEAC MDAGAAGENL 180 PRFFMEWLTS NRENISAEDL RSIRLRRSTI EAAAARLGGG RQGTKQLLKL ILTWVQNHHL 240 QRKRPRDGLE EAAGLHGHGH SQLSSPGGNP GYEFPAGVQD MAAGGGTSWM PYQQPFTPPA 300 YGGDAVYQSA AGQYPFHQSS STSSVVVNSQ PFSPPAVGDM HAAGGGNMPW TQQYMPYPGA 360 STGSYPLPPV VPQPFSPGFG GQYAGAGHPM PPQRMMVAVE ASATKEARKK RMARQRRLSC 420 LQQQRSQQLN LGQIQVPVLP QEPSAHQSTH SVPVTPSAGG WGFWSPGSPQ QVQNALSKSN 480 SSRAPMQQVP RSPEAAPPPP PAKPAPGARQ EESPQPSTAS EKRQGAKTDK NLRYLLQKVL 540 KQSDVGSLGR IVLPKKEAEV HLPELKTRDG ISIPMEDIGT SRVWNMRYRF WPNNKSRMYL 600 LENTGEFVRS NELQEGDFIV IYSDVKSGKY LIRGVKVRPA QEQQGNGSSA LGKHKHGYPG 660 PEKAGGASDD GGADGTGKPD GGCKGRSPQG VRRARHQGAT SMAVSI*

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MDACAGSSPP HSQENPPERG GDLGEAPAEE IGGEAADDFL FAEDTFPSLP DFPCLSSPSS  60
STFSSSSSSN SSCAYTTAAG GAGGGGGGGA DGAAGERSGP ASAGEGFDAL DDIDQLLDFA  120
SLSMPWDSEP TFPEVSMKLE DAMFAPPHPV GEGRREGKAV LEGTGGEEAC MDAGAAGENL  180
PRFFMEWLTS NRENISAEDL RSIRLRRSTI EAAAARLGGG RQGTKQLLKL ILTWVQNHHL  240
QRKRPRDGLE EAAGLHGHGH SQLSSPGGNP GYEFPAGVQD MAAGGGTSWM PYQQPFTPPA  300
YGGDAVYQSA AGQYPFHQSS STSSVVVNSQ PFSPPAVGDM HAAGGGNMPW TQQYMPYPGA  360
STGSYPLPPV VPQPFSPGFG GQYAGAGHPM PPQRMMVAVE ASATKEARKK RMARQRRLSC  420
LQQQRSQQLN LGQIQVPVLP QEPSAHQSTH SVPVTPSAGG WGFWSPGSPQ QVQNALSKSN  480
SSRAPMQQVP RSPEAAPPPP PAKPAPGARQ EESPQPSTAS EKRQGAKTDK NLRYLLQKVL  540
KQSDVGSLGR IVLPKKEAEV HLPELKTRDG ISIPMEDIGT SRVWNMRYRF WPNNKSRMYL  600
LENTGEFVRS NELQEGDFIV IYSDVKSGKY LIRGVKVRPA QEQQGNGSSA LGKHKHGYPG  660
PEKAGGASDD GGADGTGKPD GGCKGRSPQG VRRARHQGAT SMAVSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	6e-37	532	642	1	111	B3 domain-containing transcription factor FUS3
6j9b_D	6e-37	532	642	1	111	B3 domain-containing transcription factor FUS3
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4716	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Between 10 and 30 days after pollination.
Uniprot	TISSUE SPECIFICITY: Seed.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J504700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816909.1	0.0	regulatory protein viviparous-1
Swissprot	P26307	0.0	VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBL	A0A2T8IIY4	0.0	A0A2T8IIY4_9POAL; Uncharacterized protein
STRING	Pavir.J03563.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7529	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	2e-63	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.J504700.1.p

Publications ? help Back to Top
Williamson JD,Scandalios JG Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression. Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6 [PMID:1388272] Hoecker U,Vasil IK,McCarty DR Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize. Genes Dev., 1995. 9(20): p. 2459-69 [PMID:7590227]