PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J500900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 338aa    MW: 33609.1 Da    PI: 8.5954
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J500900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702213.54.9e-661092694154
             DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel..kskkqsa 85 
                         ++sCqdCGn+akkdC+h+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+++        a+aaskr++el  +  +  +
  Pavir.J500900.1.p 109 AGTSCQDCGNNAKKDCTHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANNNsasaaaaaAAAASKRPHELvrSLGRLPS 200
                        4579****************************************************999998886666665555556666655442222333 PP

             DUF702  86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        ++s+ +++++s+   +  ++P+e+++eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
  Pavir.J500900.1.p 201 ANSAMVTTTTSSGDGSGGRFPPELNVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 269
                        3333333333444444556***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-62110268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.1E-26112154IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-18219267IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAGFSLRGGG GGGGRGGDRA GDHPIGADSL FLYARGAAAA AADTAASGGG GGGIGFQLWH  60
PHQQAAAAPH TSQFFSSGVA TGVVLGFSSH DGSGGIGGPG GGGAGGGRAG TSCQDCGNNA  120
KKDCTHMRCR TCCRSRGFSC PTHVKSTWVP AAKRRERQQQ LAALFRGAAN NNSASAAAAA  180
AAAASKRPHE LVRSLGRLPS ANSAMVTTTT SSGDGSGGRF PPELNVEAVF RCVRIGPVDE  240
PDAELAYQTA VSIGGHTFKG ILRDHGPADD AAVGQLPPSS AEYHQLTGQA REGSSPAGSS  300
EAAATVATSA AVLMDPYPTP IGAFAAGTQF FPHNPRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614RGGGGGGGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.203380.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J500900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043291e-143AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054631e-143AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149621e-143AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813341.11e-163protein SHI RELATED SEQUENCE 1
TrEMBLA0A2T7DU751e-170A0A2T7DU75_9POAL; Uncharacterized protein
STRINGPavir.J38504.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.14e-52Lateral root primordium (LRP) protein-related