PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J467400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 211aa MW: 22922.9 Da PI: 9.8798 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.4 | 7.6e-31 | 55 | 111 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rakle+++kl k+rk ylheSRh+hA++R Rg+gG F Pavir.J467400.1.p 55 EEPIFVNAKQYRAILRRRQMRAKLEAQNKL-VKGRKLYLHESRHRHAMKRVRGPGGPF 111 69****************************.*************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.6E-33 | 53 | 114 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.777 | 54 | 114 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.9E-26 | 56 | 111 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.2E-21 | 57 | 79 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 59 | 79 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.2E-21 | 88 | 111 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLHLPTTVFQ ACASYTADTY YCGVLTGYTS NAIVHPQING AANSRVPLPI EPAAEEPIFV 60 NAKQYRAILR RRQMRAKLEA QNKLVKGRKL YLHESRHRHA MKRVRGPGGP FLNRKELQEQ 120 QGQEALPSLQ TPTGGVGKMA LCRNLCPENS ASHSPSTSSG TSSVSNGGGM VTHQEHISFS 180 SSDFLPSMNF HAENGNEKIA VNGVRHCTPS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 9e-21 | 55 | 116 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 104 | RHRHAMKRVR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16025 | 1e-44 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J467400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797222.1 | 1e-108 | nuclear transcription factor Y subunit A-3-like isoform X3 | ||||
Refseq | XP_025797223.1 | 1e-108 | nuclear transcription factor Y subunit A-3-like isoform X3 | ||||
TrEMBL | A0A3L6TG48 | 1e-111 | A0A3L6TG48_PANMI; Nuclear transcription factor Y subunit A-4-like isoform X1 | ||||
STRING | Pavir.J06649.1.p | 1e-147 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 6e-32 | nuclear factor Y, subunit A6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J467400.1.p |