PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J417000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 495aa    MW: 52421.4 Da    PI: 6.7476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J417000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.9e-13402447454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Pavir.J417000.1.p 402 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 447
                        799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-291112IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.49E-17397459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-14401451No hitNo description
PfamPF000103.0E-10402447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16402456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
LRELNSLISG AAAAPDEAVE EEVTDTEWFF LVSMTQSFLN GSGLPGQALF AGQPTWIASG  60
LSAAPCERAR QAYNFGLRTM VCVPVGTGVL ELGSTDVVFQ TAESMAKIRA LFGGGGGAGG  120
GSWPPVQPPA PPQQPAPGAD QAETDPSVLW LADPVMDIKD SLSHPSAEIS VSKPPPPPPQ  180
IHFENGSTST LTENPSPSVH APPPPPAPAA APPQRQHQQN QGPFRRELNF SDFASNPSSM  240
AAAPPFFKPE SGEILSFGAD SNGRRNQSPA PPAATASLTT APGSLFSQHT ATLTAAAAND  300
AKNNTTTNNN KRSMEATSRA SNTNHHPAAT ANEGMLSFSS APTMRQSTGT GAPAKSESDH  360
SDLDASVREV ESSRVVAPPP EAEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA  420
LRAVVPNVSK MDKASLLGDA ISYINELRGK LTALERCLLA GHQLPLRQQL RGPEGMVDQA  480
QHQDQNITVS RPVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-35111279192Transcription factor MYC3
4rqw_B1e-35111279192Transcription factor MYC3
4rs9_A1e-35111279192Transcription factor MYC3
4yz6_A1e-35111279192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383391KRPRKRGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in spikelets and floral organs. {ECO:0000269|PubMed:24647160}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J417000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0611070.0AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335485.10.0myc transcription factor 7
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLQ9ZPN60.0Q9ZPN6_MAIZE; Transcription factor MYC7E (Fragment)
STRINGPavir.J28686.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.14e-35bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]