PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J359100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 244aa MW: 27399.1 Da PI: 8.8935 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.1 | 4.6e-25 | 33 | 134 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt+sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F Pavir.J359100.1.p 33 FCKTLTTSDTSTHGGFSVPRRAAEDCfppldyeQLRP--SQELIAKDLHGMKWRFRHIYRGQPRRHLLTTGWSSFINKKKLVSGDAVLFL-- 120 99****************************9866664..459************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + s++el+++v+r+ Pavir.J359100.1.p 121 RGSDGELRLGVRRA 134 449999*****996 PP | |||||||
2 | Auxin_resp | 98.2 | 1.1e-32 | 159 | 240 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +a++++++s+F++ +nPr+++seF+v++ k++k+l++++s+Gm+fk+ e+ed+++r+ G+++g+s++d++ Wp+SkWr+L+ Pavir.J359100.1.p 159 VASSLDNRSIFHISFNPRTGASEFIVPYCKFLKSLNCPFSIGMKFKVGSENEDANQRS-CGLISGISEVDSIGWPGSKWRCLQ 240 578899**************************************************99.8**********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-44 | 23 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-39 | 29 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.17E-21 | 31 | 133 | No hit | No description |
Pfam | PF02362 | 5.2E-23 | 33 | 134 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.183 | 33 | 135 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-23 | 33 | 135 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.9E-27 | 160 | 240 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MFDQNTRDGE TEEKNCEMED GDGQKKLRTP HMFCKTLTTS DTSTHGGFSV PRRAAEDCFP 60 PLDYEQLRPS QELIAKDLHG MKWRFRHIYR GQPRRHLLTT GWSSFINKKK LVSGDAVLFL 120 RGSDGELRLG VRRAVQLKNE ALLEAVNSTD SKLRTLSAVA SSLDNRSIFH ISFNPRTGAS 180 EFIVPYCKFL KSLNCPFSIG MKFKVGSENE DANQRSCGLI SGISEVDSIG WPGSKWRCLQ 240 VSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-70 | 33 | 243 | 158 | 370 | Auxin response factor 5 |
4ldy_A | 1e-70 | 1 | 243 | 91 | 335 | Auxin response factor 1 |
4ldy_B | 1e-70 | 1 | 243 | 91 | 335 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J359100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033989 | 0.0 | BT033989.1 Zea mays full-length cDNA clone ZM_BFc0044P12 mRNA, complete cds. | |||
GenBank | BT064853 | 0.0 | BT064853.1 Zea mays full-length cDNA clone ZM_BFb0215K23 mRNA, complete cds. | |||
GenBank | BT067427 | 0.0 | BT067427.1 Zea mays full-length cDNA clone ZM_BFc0041D22 mRNA, complete cds. | |||
GenBank | JX428510 | 0.0 | JX428510.1 Zea mays subsp. mays clone pUT3108 ARF23 ARF type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807097.1 | 1e-162 | auxin response factor 14-like isoform X2 | ||||
Refseq | XP_025807099.1 | 1e-163 | auxin response factor 14-like isoform X4 | ||||
Swissprot | Q0DGS1 | 1e-127 | ARFN_ORYSJ; Auxin response factor 14 | ||||
TrEMBL | A0A2T7EBI2 | 1e-161 | A0A2T7EBI2_9POAL; Auxin response factor | ||||
TrEMBL | A0A3L6STX8 | 1e-161 | A0A3L6STX8_PANMI; Auxin response factor | ||||
STRING | Pavir.J17623.1.p | 1e-180 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2537 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-106 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J359100.1.p |
Publications ? help Back to Top | |||
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