PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J345100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 309aa    MW: 33250.2 Da    PI: 6.5144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J345100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-073882244
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       g+WT eE +l+ +a ++   +   +W+++a+ ++ gR   +++ ++
  Pavir.J345100.1.p 38 GAWTLEENKLFERALARVDWDapdRWERVAALLP-GRMVSDVVAHY 82
                       79****************99999***********.********999 PP
2Myb_DNA-binding452.5e-14155199347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  Pavir.J345100.1.p 155 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 199
                        7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.3E-53688IPR001005SANT/Myb domain
PROSITE profilePS500906.1443886IPR017877Myb-like domain
SuperFamilySSF466899.33E-103893IPR009057Homeodomain-like
PfamPF002498.4E-63882IPR001005SANT/Myb domain
CDDcd001675.63E-63982No hitNo description
PROSITE profilePS5129416.847147204IPR017930Myb domain
SuperFamilySSF466891.36E-17150204IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-17151202IPR006447Myb domain, plants
SMARTSM007175.3E-12152202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-12153198IPR009057Homeodomain-like
CDDcd001671.97E-11155200No hitNo description
PfamPF002491.3E-11155199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTESWMDVLP PAPAPPYYAG QAGGRFLPDR RASAPGPGAW TLEENKLFER ALARVDWDAP  60
DRWERVAALL PGRMVSDVVA HYDDLENDVC FIEAGLVPFP HYGGAAGSAA GFTFDWDGGD  120
ADAAAAGLGS FKRSCYMAGA RRGRGPDQER KKGIPWTEEE HKLFLMGLKK YGRGDWRNIS  180
RNFVTSRTPT QVASHAQKYF IRLNSGGKDK RRSSIHDITT VNLPDEDGGG GNPSPSPPSA  240
LTAASTPSST GGPVISEQFG VLVDSKPAPT HHFVPHPYGN VKLEPSNSGF LDDSVLMQMQ  300
CGQLQPLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1532108279RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.170560.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J345100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804913.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H75e-75DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2S3HBI30.0A0A2S3HBI3_9POAL; Uncharacterized protein
STRINGPavir.J04337.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-73Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]