PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J322700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 383aa    MW: 39208.8 Da    PI: 5.428
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J322700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18254288135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Pavir.J322700.1.p 254 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 288
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.107.8E-15247285IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.3E-17248298IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.387248284IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-15250311No hitNo description
CDDcd002028.19E-14253300No hitNo description
PfamPF003207.6E-16254288IPR000679Zinc finger, GATA-type
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEVPAECAGG GRVKKEADLF LVDDLLDLPC DDEEEEVQGA VVEGEGEGSK AEDCGAAGGG  60
EDGGAGNASN DSSTVTALDS CSNSLSGLAD GDFSGGLCEP YDQLAELEWL SNYMGEDNFP  120
TEDLKKLQLI TGIPPASASA ATASAPAPAP AAAAAQPGGG VLPPEASVPG KARSKRSRVA  180
PCSWASRLLV LPPTPTSPPS PASAAISPSE SGTAAPAFPA KKTSKPTKKK EAPTTPAPNA  240
AAAAAASAGE GRRCLHCETD KTPQWRTGPL GPKTLCNACG VRYKSGRLVP EYRPAASPTF  300
VVSKHSNSHR KVLELRRQKE AHLHPQHQYQ PQPQALGHVG AGASGGLMHA PGPLMFDGPA  360
GPLIGDDFLI HNRVGPDFRQ LI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J322700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961467.11e-155GATA transcription factor 12
TrEMBLA0A1E5VH411e-180A0A1E5VH41_9POAL; GATA transcription factor 9
STRINGPavir.J33978.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-60GATA transcription factor 9