PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.J316300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 24892.2 Da PI: 11.0414 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.1 | 6.3e-11 | 30 | 75 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd l++ v+ +G+ +W++I ++ + Rt+k+c++rw + Pavir.J316300.1.p 30 KGPWMAEEDAVLLEHVRAHGPCDWSSIRSKGLLPRTGKSCRLRWVN 75 79*************************8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.5e-14 | 86 | 126 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ +++ +q+G++ W++Ia +++ gRt++++k++w Pavir.J316300.1.p 86 KFSAEEERVVLELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 126 79******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.316 | 25 | 77 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-18 | 27 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.43E-26 | 28 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-9 | 29 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.36E-10 | 32 | 77 | No hit | No description |
Pfam | PF13921 | 4.7E-10 | 33 | 83 | No hit | No description |
PROSITE profile | PS51294 | 20.252 | 78 | 133 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 79 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-12 | 83 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.77E-11 | 86 | 125 | No hit | No description |
Pfam | PF00249 | 4.7E-12 | 86 | 126 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MARAPGGGRR RGGGGSRRRD AAGGGDAVRK GPWMAEEDAV LLEHVRAHGP CDWSSIRSKG 60 LLPRTGKSCR LRWVNKLRPN LKTGCKFSAE EERVVLELQA QFGNKWARIA TYLPGRTDND 120 VKNFWSTRQK RLARLLRAPL PARCTSRNTS AAASKAPAAA ASSLESRPAT VGPCLDRVPF 180 GSSSSGVHPC SAATPFMDAR NAALVPYDQS ASGLLSFNGA LPPFAPGTDS HEC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 28 | 131 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 6 | 14 | GGRRRGGGG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.J316300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL663000 | 6e-53 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. | |||
GenBank | AL731613 | 6e-53 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. | |||
GenBank | AP014960 | 6e-53 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 6e-53 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855218 | 6e-53 | CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824013.1 | 1e-126 | probable transcription factor MYB58 | ||||
Swissprot | Q0JB89 | 1e-81 | MYB58_ORYSJ; Probable transcription factor MYB58 | ||||
TrEMBL | A0A2S3I9S8 | 1e-125 | A0A2S3I9S8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J30013.1.p | 1e-166 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5700 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60460.1 | 2e-58 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.J316300.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|