PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J314800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 283aa MW: 30600 Da PI: 12.4702

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J314800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.9	5.7e-19	11	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + Pavir.J314800.1.p 11 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56 79****************************.*********985 PP
2	Myb_DNA-binding	39.3	1.5e-12	63	98	1	38
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 r ++T+eEd ++ a+++lG++ W++Iar ++ gRt++ Pavir.J314800.1.p 63 RRPFTPEEDAAILAAHARLGNR-WAAIARLLP-GRTDN 98 679*****************.*****.*98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.481	6	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.25E-28	8	99	IPR009057	Homeodomain-like
SMART	SM00717	9.6E-17	10	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-18	11	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-25	12	64	IPR009057	Homeodomain-like
CDD	cd00167	2.85E-16	13	55	No hit	No description
SMART	SM00717	5.3E-5	62	116	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-10	63	98	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	9.948	63	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-16	65	98	IPR009057	Homeodomain-like
CDD	cd00167	1.63E-8	65	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGVESECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTPEE DAAILAAHAR LGNRWAAIAR LLPGRTDNRR EEPLELVAQA EARHRGGAGG 120 RRRGAAVQAR EPRAGEPDGV GAQRAQPRLR RRRRAGVPPR PARGRVRRHR RRGRAPSAAA 180 GRGPAHLALP LAAGAGPGVL GVPPRQRPEP LPGAPRLALP VPSLAALVVV LLLHRPPLPV 240 QRRAGGGDAG DDPRGGAQVH VRRGAPRRGP WARRACRSSW RA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-31	8	98	4	94	B-MYB

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4501	0.0	callus\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J314800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038391	0.0	BT038391.1 Zea mays full-length cDNA clone ZM_BFb0229K03 mRNA, complete cds.
GenBank	EU956045	0.0	EU956045.1 Zea mays clone 1556153 MYB transcription factor TaMYB1 mRNA, complete cds.
GenBank	HQ858701	0.0	HQ858701.1 Zea mays clone UT1157 MYB transcription factor mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	1e-45	myb domain protein r1

Link Out ? help Back to Top
Phytozome	Pavir.J314800.1.p