PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J304200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 314aa MW: 33565.8 Da PI: 9.1743

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J304200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.7	2.9e-31	59	157	2	99
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 CaaC+++r++C+++C+lapyfpa++ p +f+ v ++FG++n+l++l+++p+ + ++ +++lv e+++r+ dPv+G++g + +l+ ql +++ Pavir.J304200.1.p 59 CAACRHKRQRCPPGCALAPYFPADDdPDRFRSVLRVFGVKNLLRTLREVPRPRWDACVRTLVHESRMRLADPVRGCLGAVEDLEAQLVDTAV 150 *********************8779*************************************************************** PP DUF260 93 elallke 99 el++l++ Pavir.J304200.1.p 151 ELEVLRR 157 *998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.449	57	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.2E-30	59	156	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
PSGGAIASES EPDSPSSDGT SSPPPPAPAT GGSSIASSST PPPRAPATGP GGGSPPPGCA 60 ACRHKRQRCP PGCALAPYFP ADDDPDRFRS VLRVFGVKNL LRTLREVPRP RWDACVRTLV 120 HESRMRLADP VRGCLGAVED LEAQLVDTAV ELEVLRRRQE AYRQAKRRGL RWFQPPDPGE 180 AAAARQQPWR TRGDSMQPQD PYGAAWPQAM AGLAATQTRL SPTQPEVLSS WPSATTGITA 240 TQPQLISAMP PPQLYATQPQ FFAMQPQPAM LGQRRWYTTA SATRGQTTTS GAGRVTQTPM 300 ICDDTVATRN HNC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-21	48	153	4	105	LOB family transfactor Ramosa2.1
5ly0_B	6e-21	48	153	4	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J304200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436474.1	5e-44	LOB domain-containing protein 22
TrEMBL	A0A3L6Q7S8	2e-85	A0A3L6Q7S8_PANMI; Uncharacterized protein
STRING	Pavir.J29594.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19681	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	5e-18	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Pavir.J304200.1.p