PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J257700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 162aa MW: 17365.8 Da PI: 10.518 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.2 | 3.1e-12 | 117 | 153 | 3 | 39 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 + k rr+++NReAAr+sR+RKka+i++Le+ L+ Pavir.J257700.1.p 117 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLS 153 67999************************98554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.3E-9 | 114 | 160 | No hit | No description |
SMART | SM00338 | 0.0069 | 115 | 161 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.301 | 117 | 162 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.2E-9 | 118 | 154 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.16E-7 | 119 | 160 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 122 | 137 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
HSSSHLLLYI FICKYIHGMA CSCCMCGHCA ETLNIFPSQP MHVVEPALPK HQGSMGTNNT 60 TPNAGAGPSS KRPPPAAGGP KDGKTAAVKR EAGSSGGALG SGTPSTSKHQ EGPRTPDAKT 120 LRRLAQNREA ARKSRLRKKA YIQNLETSRI RLSQLEQELH RS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J257700.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368931 | 5e-31 | AK368931.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2082I06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791994.1 | 8e-63 | transcription factor TGAL9-like isoform X3 | ||||
Swissprot | Q0E342 | 4e-36 | TGAL9_ORYSJ; Transcription factor TGAL9 | ||||
TrEMBL | A0A3L6RRA8 | 1e-62 | A0A3L6RRA8_PANMI; Transcription factor TGA2-like isoform X2 | ||||
STRING | Pavir.J27823.1.p | 1e-116 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2732 | 36 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 3e-21 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J257700.1.p |
Publications ? help Back to Top | |||
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