PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J236300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 243aa    MW: 26521.7 Da    PI: 8.3393
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J236300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.3e-21666257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++R+++t+eql +Lee++++  r+p+a+e+++++++l    +++ ++V++WFqN++a+e++
  Pavir.J236300.1.p  6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66
                       58*****************99**************************************97 PP
2Wus_type_Homeobox121.24.3e-39567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+
  Pavir.J236300.1.p  5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67
                       689***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.463267IPR001356Homeobox domain
SMARTSM003896.8E-6471IPR001356Homeobox domain
CDDcd000862.19E-4560No hitNo description
PfamPF000461.6E-18666IPR001356Homeobox domain
SuperFamilySSF466891.24E-11767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-7866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH  60
KARERQRLRR RLCARHQQQQ QQQQQQAGGS SAAAVHPAVM QLHGHHHHHP YATSSFMPHP  120
NQLGYLGGPQ QQQQQAAAPL PVPAVLNNPA AAGGNKATAA GACGAAAAAL SNQQQLEEWD  180
AETISMMEHC NANCGGDEGL QLPPYACCRR PLKTLDLFPT KSTGLRDECS SSKSSSCSTS  240
TN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in tissues enriched for shoot meristems and young lateral organ primordia. First expressed in lateral domains of shoot meristems. It is then expressed in the margins of young lateral organ primordia. Not expressed in roots, seedling leaves or fully expanded coleoptiles. Also expressed in vegetative shoot apices (five leaf primordia and the SAM) and in the male inflorescence. Expressed at high level in the female inflorescence. {ECO:0000269|PubMed:15169755}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269|PubMed:15169755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J236300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4720821e-100AY472082.1 Zea mays narrow sheath 2 mRNA, complete cds.
GenBankAY4720831e-100AY472083.1 Zea mays narrow sheath 2 gene, complete cds.
GenBankBT0650961e-100BT065096.1 Zea mays full-length cDNA clone ZM_BFb0377N07 mRNA, complete cds.
GenBankEU9690871e-100EU969087.1 Zea mays clone 325979 WUSCHEL-related homeobox 3B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822519.11e-81WUSCHEL-related homeobox 3B-like
SwissprotQ6S3I32e-80WOX3B_MAIZE; WUSCHEL-related homeobox 3B
TrEMBLA0A3L6QTL12e-92A0A3L6QTL1_PANMI; WUSCHEL-related homeobox 3B
STRINGPavir.J34412.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-34WOX family protein