PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J174400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 227aa MW: 23678.6 Da PI: 7.5084 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.2 | 2.3e-18 | 133 | 166 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C + +Tp+WR+gp g++tLCnaCG+++++ + Pavir.J174400.1.p 133 CTHCASEETPQWRQGPAGPSTLCNACGVRFKSGR 166 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.899 | 127 | 163 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.1E-14 | 127 | 181 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.33E-14 | 129 | 191 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.4E-14 | 131 | 164 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 133 | 158 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.39E-13 | 133 | 179 | No hit | No description |
Pfam | PF00320 | 4.2E-16 | 133 | 166 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAGLEAEEEN PAAAAAAAEL AGGADASLNA FFDHAGLELA AGGGGQGAEE EEELEWLSNM 60 DAFPSVETMA AEVEAAPSRP SAGLGCLEAL PHVVGPRTKG LRRRRRVTAP WSLPPVLPPA 120 PPPAGGGAPR RRCTHCASEE TPQWRQGPAG PSTLCNACGV RFKSGRLFPE YRPMNSPTFT 180 PLLHSNSHRR VLEMRRHVEE EAAAGSGRAG ARARCAKRAA ATPHGK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J174400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018418 | 1e-113 | BT018418.1 Zea mays clone EL01N0356F04.d mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004987179.1 | 3e-90 | GATA transcription factor 7 | ||||
TrEMBL | A0A3L6THM0 | 2e-89 | A0A3L6THM0_PANMI; GATA transcription factor 7 | ||||
STRING | Pavir.J23680.1.p | 1e-158 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 3e-33 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J174400.1.p |