PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J158600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 440aa    MW: 47336.7 Da    PI: 9.6757
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J158600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.61.7e-13128159132
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                        C +Cg+ +Tp+WR+gp  + tLCnaCG++ + 
  Pavir.J158600.2.p 128 CLQCGAVETPQWRSGPMRSGTLCNACGVRLKA 159
                        89**************************9986 PP
2GATA51.51.4e-16258292135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Pavir.J158600.2.p 258 CLHCGSSSTPQWREGPMGRSTLCNACGVRYRQGRL 292
                        99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-9122172IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558122176IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.23E-12122168No hitNo description
Gene3DG3DSA:3.30.50.101.2E-12126165IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.45E-9127170No hitNo description
PfamPF003204.3E-11128159IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-15252306IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.651252288IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-13253311No hitNo description
Gene3DG3DSA:3.30.50.105.8E-14256290IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.47E-13257313No hitNo description
PROSITE patternPS003440258283IPR000679Zinc finger, GATA-type
PfamPF003202.2E-14258292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MATGDFTGGG REGELEGALG YVLSLPAAAL PLPVAVSCLD ATVPRKARSR PRLRAQPCSW  60
WTFELPVPAP EEAKDPPPTA SAATNPTEVA RPPRPPRPRP RVCQAPPPDD PRTPAPAMER  120
PAKRARRCLQ CGAVETPQWR SGPMRSGTLC NACGVRLKAA GALREQVHRP PPATARTVAE  180
PPPESPVSDS SPDGPIWEPG SVPDVYLLRK KPPKQGRSEA ASPSAPAVFL VKNKKTKKKA  240
PKTPRKKPWR PRKSAKRCLH CGSSSTPQWR EGPMGRSTLC NACGVRYRQG RLLPEYRPLA  300
SPTFEPSEHA NRHSQVLQLH RQRKGQKSQQ PLPAEEPRPG DDPTAAPACG CGDDPMNVLL  360
PRRWHNKNEY PPTPLHQPQL QPADSLAGDQ HVGDMDDSAQ GRGGGSSNDP NDAPSSLDSM  420
LLEGPSAPLI VDGDEPLID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231246KNKKTKKKAPKTPRKK
2233247KKTKKKAPKTPRKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J158600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337272e-97BT033727.1 Zea mays full-length cDNA clone ZM_BFc0117H23 mRNA, complete cds.
GenBankBT0404242e-97BT040424.1 Zea mays full-length cDNA clone ZM_BFc0090I01 mRNA, complete cds.
GenBankBT0687872e-97BT068787.1 Zea mays full-length cDNA clone ZM_BFb0382C16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805140.10.0pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLA0A2S3H6860.0A0A2S3H686_9POAL; Uncharacterized protein
STRINGPavir.J37525.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-27GATA transcription factor 4