PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J124600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 256aa MW: 26951.2 Da PI: 10.9124 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57 | 5.1e-18 | 75 | 159 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt +e+l Li+a+r +++r + + +++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e++ Pavir.J124600.1.p 75 WTLHETLILITAKRLDDDRRAGAVgaahghahgspttprSSEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYESRT 159 **************5554444321233444555555665*****************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.655 | 67 | 146 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 68 | 148 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 8.0E-12 | 74 | 158 | No hit | No description |
Gene3D | G3DSA:1.20.5.600 | 5.6E-4 | 150 | 182 | IPR012897 | Potassium channel, voltage dependent, Kv1.4, tandem inactivation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006813 | Biological Process | potassium ion transport | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005249 | Molecular Function | voltage-gated potassium channel activity | ||||
GO:0030955 | Molecular Function | potassium ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MSANTVAKAA APMSGSSDPS PSSSAAASPL ALLRPHPHAH AHAGHLTPPS PASGGPAPPP 60 PSPASAPRDY RKGNWTLHET LILITAKRLD DDRRAGAVGA AHGHAHGSPT TPRSSEQRWK 120 WVENYCWNHG CLRSQNQCND KWDNLLRDYK KVRDYESRTA AAAAVAGTAA APGGGGGAGA 180 VPSYWSMERH ERKDRNLPTN LAPEVFDALT DVLSRRAARR GGAAIAAAPP PPAPPSPPKP 240 LVAQPAPRRR LPRRF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J124600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB455326 | 0.0 | AB455326.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/01-Ar-01. | |||
GenBank | AB455327 | 0.0 | AB455327.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/97-Ar-02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826016.1 | 9e-85 | trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A2T7D1G8 | 4e-94 | A0A2T7D1G8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J20189.1.p | 1e-172 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 5e-39 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J124600.1.p |