PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J028900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 148aa MW: 16294.8 Da PI: 10.674 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.8 | 3.8e-31 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt +LH++Fv+a++ LGG++kAtPk il++m+ kgLt++hvkSHLQ+YR Pavir.J028900.1.p 19 PRMRWTADLHRSFVRAIDCLGGQDKATPKLILQFMGAKGLTISHVKSHLQMYRA 72 9****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 15 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.442 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-16 | 16 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-23 | 19 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGGGGKNGDV RKYIRSKEPR MRWTADLHRS FVRAIDCLGG QDKATPKLIL QFMGAKGLTI 60 SHVKSHLQMY RAARLGGARR GMQAAQLQRR HSCAGDEQGP KEFLCPRLKR ARMGTAAVYE 120 SLQGSHGISE PRTAAAGSLY CVDDYMQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J028900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961920 | 2e-88 | EU961920.1 Zea mays clone 239042 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976515.1 | 2e-86 | protein PHR1-LIKE 3 isoform X1 | ||||
Refseq | XP_022683888.1 | 1e-86 | protein PHR1-LIKE 3 isoform X2 | ||||
Swissprot | Q700D9 | 3e-28 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2T7CYR3 | 2e-85 | A0A2T7CYR3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CYR7 | 2e-85 | A0A2T7CYR7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J09702.1.p | 1e-106 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2966 | 35 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 2e-28 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J028900.1.p |