PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J026900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 342aa MW: 36192.5 Da PI: 4.5413

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J026900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.4	2.7e-23	9	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..d 89 lppGf F P+d ++v yL ++v g++l+le i + d +++ Pw+L + ++++++ +fF+ + k+++g+r++r + g+W+ + d Pavir.J026900.1.p 9 LPPGFLFAPEDGDVVASYLLPRVLGQPLPLEGLIVDDDPLSAPPWELL-ERNGRREDAFFFALGQVKSSKGSRQKRtCAGGGFWNGERTcvD 99 79**************************999**********7.445677899**************7778995433224 PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 e l + + + k+ L f +a + +t Wvmhey++ Pavir.J026900.1.p 100 GEKLPVgAEVVEWRKRALSFQ--HAGDKGSTGWVMHEYAI 137 433333255567788899998..3444448*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-31	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	28.131	9	156	IPR003441	NAC domain
Pfam	PF02365	3.0E-14	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEVPRVLGLP PGFLFAPEDG DVVASYLLPR VLGQPLPLEG LIVDDDPLSA PPWELLERNG 60 RREDAFFFAL GQVKSSKGSR QKRTCAGGGF WNGERTCVDG EKLPVGAEVV EWRKRALSFQ 120 HAGDKGSTGW VMHEYAITAP DHLAESQLRL YRIRFSGHGK KRKRAEADPS GDESAAPAAG 180 RRRVAEDDTL FGMLMPSSDP ICSSTVLANQ ADGNGVNGEE LQAAATTVSA GQDVTSGIDT 240 CWDGFQFLEN LDFDELLRSI GDLPSPNRAA LPAVVTGPGA YLDADAEVSS FFSQTAAAAA 300 PPFAGFGAGL VAPSAPGMHH GCMDPADSFF LPVPNQSYAA C*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEVPRVLGLP PGFLFAPEDG DVVASYLLPR VLGQPLPLEG LIVDDDPLSA PPWELLERNG  60
RREDAFFFAL GQVKSSKGSR QKRTCAGGGF WNGERTCVDG EKLPVGAEVV EWRKRALSFQ  120
HAGDKGSTGW VMHEYAITAP DHLAESQLRL YRIRFSGHGK KRKRAEADPS GDESAAPAAG  180
RRRVAEDDTL FGMLMPSSDP ICSSTVLANQ ADGNGVNGEE LQAAATTVSA GQDVTSGIDT  240
CWDGFQFLEN LDFDELLRSI GDLPSPNRAA LPAVVTGPGA YLDADAEVSS FFSQTAAAAA  300
PPFAGFGAGL VAPSAPGMHH GCMDPADSFF LPVPNQSYAA C*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	164	GKKRKRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J026900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813463.1	1e-142	uncharacterized protein LOC112890817
TrEMBL	A0A2T7F7A7	0.0	A0A2T7F7A7_9POAL; Uncharacterized protein
TrEMBL	A0A2T8KWH3	0.0	A0A2T8KWH3_9POAL; Uncharacterized protein
STRING	Pavir.J11803.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-14	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Pavir.J026900.1.p