PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J018300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 309aa    MW: 32835.2 Da    PI: 4.452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J018300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-1869119155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GVr+++ +g+W+Ae+rdp+    r  r++lg+f tae Aa+a++ a++ l+g
  Pavir.J018300.1.p  69 SQYHGVRRRP-WGKWAAEVRDPV----RgVRVWLGTFATAEAAARAYDDAARDLRG 119
                        78********.**********63....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.66E-1569129No hitNo description
SuperFamilySSF541712.22E-2169128IPR016177DNA-binding domain
PfamPF008472.3E-1270119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3070128IPR001471AP2/ERF domain
SMARTSM003804.3E-3170133IPR001471AP2/ERF domain
PROSITE profilePS5103223.55170127IPR001471AP2/ERF domain
PRINTSPR003672.8E-107182IPR001471AP2/ERF domain
PRINTSPR003672.8E-1093109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MCGGAILAEL IPSGGRRGAP AAAAKDDDFE AAFREFDEDS EEEVVMLTER KASALGARAA  60
GARRNRRPSQ YHGVRRRPWG KWAAEVRDPV RGVRVWLGTF ATAEAAARAY DDAARDLRGA  120
GAKLNFPSSD TARTRKRRAA AAIAKAAPYV DLVDDGADVL GAHAPSFKNE AAETSDTISG  180
VSSCGGSLPD FSWQGMSATD DGAARPDADL HIEPDWPVEL GCPSKRARTE PQEEEVVVAP  240
PAASEGSAAL LFNALMFGDQ FSFFDGGAYE SLDGLFGGDA VGVEGNQSAV LWSFDDNRLV  300
EDTMCYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1856128473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.132730.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J018300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876889e-62BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds.
GenBankJX4699189e-62JX469918.1 Zea mays subsp. mays clone UT3174 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795465.11e-153dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2S3ITL11e-152A0A2S3ITL1_9POAL; Uncharacterized protein
STRINGPavir.J12680.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.15e-16ERF family protein