PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J015600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

BES1

Protein Properties

Length: 359aa MW: 36047.1 Da PI: 9.993

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J015600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	141.7	6.7e-44	37	113	3	79
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleea 79 r +t +ErEnn++RERrRR ia+kiy+GLR +Gny lp +Dnne lkALcreAGw+ve DGttyrkg+kp+ + Pavir.J015600.1.p 37 YVRVQTCRERENNRHRERRRRMIASKIYSGLRTHGNYTLPRTCDNNELLKALCREAGWTVELDGTTYRKGCKPPAPP 113 57999********************************************************************9444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.8E-42	38	118	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MNGGGAGGSS GGGGSGTDGV GGRGTREGKG TSRTTGYVRV QTCRERENNR HRERRRRMIA 60 SKIYSGLRTH GNYTLPRTCD NNELLKALCR EAGWTVELDG TTYRKGCKPP APPAADLCFA 120 GIGCGPAPVS PAWSSSQITL GAGSGGVFLH GAGGSNNNGF GGGGWGYAGG GLMAPWLKSL 180 SHSQPGSASA SSSSAPMTPP PQNGSPLAGM LARSAADNPA AGAGAASNVQ PPWATRAGPI 240 HYPSLPFAMP RPNPVVDRRA AAAHPMSKLA GFQMPAAAAS SSSSMAPGPS SLLSLGAGSS 300 SSSRIIHAAG PGGQIISGAQ ASAAAHGVMW EEEVGEKYSD EEALELTLGN ARTRADRA*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MNGGGAGGSS GGGGSGTDGV GGRGTREGKG TSRTTGYVRV QTCRERENNR HRERRRRMIA  60
SKIYSGLRTH GNYTLPRTCD NNELLKALCR EAGWTVELDG TTYRKGCKPP APPAADLCFA  120
GIGCGPAPVS PAWSSSQITL GAGSGGVFLH GAGGSNNNGF GGGGWGYAGG GLMAPWLKSL  180
SHSQPGSASA SSSSAPMTPP PQNGSPLAGM LARSAADNPA AGAGAASNVQ PPWATRAGPI  240
HYPSLPFAMP RPNPVVDRRA AAAHPMSKLA GFQMPAAAAS SSSSMAPGPS SLLSLGAGSS  300
SSSRIIHAAG PGGQIISGAQ ASAAAHGVMW EEEVGEKYSD EEALELTLGN ARTRADRA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	5e-20	59	109	392	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	5e-20	59	109	392	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	5e-20	59	109	392	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	5e-20	59	109	392	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J015600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468545.1	1e-46	protein BZR1 homolog 4
TrEMBL	C5WYY1	3e-45	C5WYY1_SORBI; Uncharacterized protein
STRING	Pavir.J11404.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18666	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36780.1	3e-22	BES1/BZR1 homolog 2

Link Out ? help Back to Top
Phytozome	Pavir.J015600.1.p