PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG848400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 383aa    MW: 40962.1 Da    PI: 9.8433
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG848400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.83.3e-20298360163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elk+++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++++l+se+
  Pavir.9NG848400.1.p 298 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCDSLTSEN 360
                          89***********************************************************98 PP
2bZIP_120.78.9e-073433732555
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  25 kaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                          k+e+++L+ek+++L++eN++L ++l+ l++e
  Pavir.9NG848400.1.p 343 KEELKQLQEKCDSLTSENTSLHEKLKALEDE 373
                          799*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-291101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-18140266No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-15293356No hitNo description
PfamPF001705.1E-18298360IPR004827Basic-leucine zipper domain
SMARTSM003388.6E-20298362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.541300363IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-9301357No hitNo description
CDDcd147021.14E-20303354No hitNo description
PROSITE patternPS000360305320IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGKGDVATRS KSQKSSAIQN EQSTPTNPPT AYPDWSQFQA YYNAAGSAPV TPPAFFHSSV  60
APSPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQASM PPGSHPYSPY PMQSPNGTVQ  120
TPTSGAGGSE TDKSSKNKRK TLLKRSRGSL GSLDVVAAKN NKSPAKPSAS SSNEGSSQSE  180
SGSGSSSEGS STNSKSDSRV KDSSERGQGN DSRRKGTQSS AVEPTQPSSG PVVLNPMMPF  240
WSVPPPMGGP ATTLNMGVDY WGAPASVPVH GKVIAAPASA PSSNSRDIVL SDPAIQDERE  300
LKKQKRKQSN RESARRSRLR KQAEWEEVAN RADLLKQENS SLKEELKQLQ EKCDSLTSEN  360
TSLHEKLKAL EDEKSNGNWY KD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314320RRSRLRK
2314321RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.54071e-177callus| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG848400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665280.0BT066528.1 Zea mays full-length cDNA clone ZM_BFb0014J02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795520.10.0bZIP transcription factor 16-like isoform X1
RefseqXP_025795521.10.0bZIP transcription factor 16-like isoform X1
SwissprotQ501B27e-91BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A3L6S7R90.0A0A3L6S7R9_PANMI; Transcription factor HBP-1a-like
STRINGPavir.Ia03945.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115063238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.14e-55basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]