PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG809400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 651aa    MW: 73075.2 Da    PI: 8.4053
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG809400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-07465506240
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                          ++W +eE e l +a++++++g   +W+ +++ +g+gR+ +++
  Pavir.9NG809400.1.p 465 KPWGKEEVEMLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 506
                          68***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465657.59E-2176175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.5E-2193198IPR001623DnaJ domain
SMARTSM002719.0E-1696171IPR001623DnaJ domain
CDDcd062573.65E-1397168IPR001623DnaJ domain
PROSITE profilePS5007618.54797179IPR001623DnaJ domain
PfamPF002263.7E-1897176IPR001623DnaJ domain
PRINTSPR006254.0E-8102120IPR001623DnaJ domain
PRINTSPR006254.0E-8120135IPR001623DnaJ domain
PRINTSPR006254.0E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.9E-5459506IPR009057Homeodomain-like
PROSITE profilePS500906.284459514IPR017877Myb-like domain
SuperFamilySSF466891.42E-7460507IPR009057Homeodomain-like
SMARTSM007175.4E-6463516IPR001005SANT/Myb domain
PfamPF002497.3E-6465506IPR001005SANT/Myb domain
CDDcd001671.05E-4466506No hitNo description
SMARTSM007170.002590642IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-8592645IPR009057Homeodomain-like
CDDcd001678.86E-4593635No hitNo description
PROSITE profilePS500905.901594635IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MEFQKSCLLI TYAPEIIDGA PVYVSSNCLP VKASKYEPAG HSFHAAAMKL LGLGEQEDTE  60
TDDCSVSSDD KSQDFNAASD TFSSKGKKKS SGSQQQDHYA LLGLGHLRFL ATEDQIRKSY  120
RDMALKHHPD KQAALLLAET TEEAKQTKKD EIESHFKAIQ EAYEVLIDPT KRRIYDSTDE  180
FDDDIPTDCA PQDFFKVFGP VFMRNGRWSV TQPIPSLGDD ATPIEVDKFY NFWYNFRSWR  240
EFPDDDEYDL EQAESREHRR WMERQNAKLQ EKAKKAEYAR VRTLVDNAYR KDPRIQRRKD  300
EEKAEKQRRK EAKYLAKKLQ EEEAARAAEE EKKRKEEEAK KVAEAALHQK KLKEKEKKLL  360
RKEKTRMRTL AAPVVTENRF GLSEADVEAA CASLDFEQLK KLCDGMEGKE AAEKARLLRG  420
ALNKESSSKE ANGVESSAPK SNPAVEKVPQ AKASSLLNNY EKKEKPWGKE EVEMLRKAIQ  480
KYPKGTSRRW EVVSEFIGTG RSVEEILKAT KTVLLQKPDS AKAFDSFLEK RKPAQSIASP  540
LSTRDETVGP STEGAGTASS KASAQPASSQ AANEKSAADP VPNGAPSVTD PDAWTETQVL  600
ALVQALKAFP KDASQRWEWV AAAVPGKTVV QCKKKVAAMR ENFRSKKSGE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1919329620124Zuotin
5dje_B2e-1919329620124Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.232610.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG809400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319127.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319128.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319129.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319130.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A1B6PK990.0A0A1B6PK99_SORBI; Uncharacterized protein
STRINGPavir.Ia04593.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain