PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG726300.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 228aa    MW: 25089.7 Da    PI: 9.0905
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG726300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.7e-33125181158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq Rakle+e+kl  ksrkpylheSRh hA++R+Rg++GrF
  Pavir.9NG726300.3.p 125 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTSGRF 181
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.1E-37123184IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.687124184IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-28126181IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.6E-24127149IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860129149IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.6E-24158181IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MIQFGHQMPD YDSPATQSTS ESHQEVSGMS EGSLNDHNDQ SGNHDGYSKS DENKMMSALS  60
LGNPETAYAH PKPDRSQSFA ISYPYADSYY GGAVAAYGQH AIMHPQLVGM MPSSRVPLPI  120
EPAAEEPIYV NAKQYHAILR RRQLRAKLEA ENKLVKSRKP YLHESRHLHA MKRARGTSGR  180
FLNTKQQSDS PGGSSDAQRM PANGGLFTKH EHSHPPGDRH YHARGGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-23125191267NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200080.0callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG726300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792631.11e-159nuclear transcription factor Y subunit A-7-like isoform X2
SwissprotQ9LVJ75e-43NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLA0A2S3ITS61e-158A0A2S3ITS6_9POAL; Uncharacterized protein
STRINGPavir.Ia04345.1.p1e-165(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-41nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]