PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG682300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9980.55 Da PI: 10.0394 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.1 | 2.4e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l+ +++++G g+W++ ++ g+ R++k+c++rw +yl Pavir.9NG682300.1.p 14 RGRWTAEEDEILASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.439 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.84E-22 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.47E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-7 | 65 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.257 | 66 | 88 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 89 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAE EDEILASYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADVKRGNI SKEEEDVIIK LHATLGNR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00668 | SELEX | Transfer from GRMZM2G016020 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG682300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT039485 | 1e-101 | BT039485.1 Zea mays full-length cDNA clone ZM_BFc0015O24 mRNA, complete cds. | |||
GenBank | EU959466 | 1e-101 | EU959466.1 Zea mays clone 218238 myb-related protein Myb4 mRNA, complete cds. | |||
GenBank | HQ858664 | 1e-101 | HQ858664.1 Zea mays clone UT603 MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984641.1 | 7e-57 | myb-related protein P | ||||
Swissprot | P27898 | 1e-54 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A3L6TPG0 | 6e-56 | A0A3L6TPG0_PANMI; Myb-related protein P-like | ||||
STRING | Pavir.Ia03542.1.p | 9e-58 | (Panicum virgatum) | ||||
STRING | Pavir.Ib01420.1.p | 5e-57 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47460.1 | 2e-50 | myb domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG682300.1.p |