PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG671600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 697aa MW: 77251.4 Da PI: 7.0834 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.2 | 2.5e-27 | 69 | 159 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e++ + +++++++ra tr+gCka++++k+ + gkw vtk++++HnH Pavir.9NG671600.1.p 69 DFYSTYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACDglqSDQKQHERAGTRVGCKAMIMIKNFEPGKWIVTKFVKNHNH 158 6*******************************************999998999999********************************** PP FAR1 88 e 88 Pavir.9NG671600.1.p 159 G 159 5 PP | |||||||
2 | FAR1 | 89.9 | 3.4e-28 | 207 | 299 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk+k+gkw+v+k+e+eHnH Pavir.9NG671600.1.p 207 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREIRTKKvmtdEGKTKRPRMITRVGCKAMIVVKKMKSGKWMVSKFEKEHNH 296 9********************************************99998899999********************************** PP FAR1 88 ela 90 +l+ Pavir.9NG671600.1.p 297 SLS 299 996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.2E-25 | 69 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 4.0E-26 | 207 | 299 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 697 aa Download sequence Send to blast |
MSVMEETVIR IASELKPGNG QDSLIELPRA METLVVHDDE VEKLIGLEED TELTPCEGME 60 FESEDAARDF YSTYARNAGF RIRISRYTRS RRDNSIISRR IVCSKEGFHE TRACDGLQSD 120 QKQHERAGTR VGCKAMIMIK NFEPGKWIVT KFVKNHNHGP VPPRKLDSRP VNQDCNPMEK 180 PHTIEVDPVE EPFEGMEFES EEAAKLFYVN YARLNGFRAR ISRYCRSRRD NSIISRQIVC 240 SKEGFREIRT KKVMTDEGKT KRPRMITRVG CKAMIVVKKM KSGKWMVSKF EKEHNHSLSY 300 SKMIPITSNI TSGEVAHFDA KSADHNDVKN EGHCEGTQCN PADSLTVLYN NLCQEAIKFA 360 KEGSVTEEIY HVAVSALKEA AEKVAEVKRS RPTSHRGFIS ESKHDVLHAK TMSTLQCSNE 420 VELKTTSPGS VTLQESASNR LLVPTNILTD SMLYNRGNNV PPSSDFSTNG RQGRHTTEGS 480 LMHFDNIKGT SSQKSQNTRS NHAIHGKDEG IRGSSEETMV AIPAIPLALC MPMMQNLPRS 540 SSEGPYRLLT APIEAVPISY RPAEPIRQPQ KGVCALGPFA GVLTELNKRG MGPNSLVHAT 600 ALACGARVAP LEEAASLISV VESKIRSGEA IIAKLPSSNM TFPVPPAIAM SSSSEDEENG 660 HSEPLMVDIN RNCHDQSSDE MKLQSGPSEL ETEADN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG671600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797822.1 | 0.0 | uncharacterized protein LOC112877680 | ||||
TrEMBL | A0A2S3ISD8 | 0.0 | A0A2S3ISD8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03883.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9031 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06250.1 | 4e-23 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG671600.1.p |