PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG602300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WOX | ||||||||
Protein Properties | Length: 311aa MW: 31973.5 Da PI: 7.4092 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.6e-15 | 34 | 94 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Pavir.9NG602300.1.p 34 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 94 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.9 | 1.2e-34 | 33 | 96 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Pavir.9NG602300.1.p 33 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 96 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.35E-14 | 28 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.256 | 30 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-6 | 32 | 99 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 34 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.9E-13 | 34 | 94 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDGSSNSPDR QSSGGSPEER GSGSGGRGTG EPVRSRWTPK PEQILILESI FNSGMVNPPK 60 DETVRIRKLL ERFGAVGDAN VFYWFQNRRS RSRRRQRQMQ ATAAAAAAAA SSAAQQSSPV 120 ASPTVGLPSG AVQYPVAMGG SASVCQYEQQ ASSSSSSGST GGSSLGLFAL GPGVPGTGAA 180 GYFQASCGAS SPLASGLMGD VDSGGSDDLF AISRQMGFAE SPVASSSVAP STAGHQQQYY 240 SSQSPAATIT VFVNGVPMEV PRGPIDLRAM FGQDVMLVHS TGALLPVNDY GILTQSLQMG 300 ESYFLVARPT * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG602300.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728413 | 0.0 | KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796618.1 | 1e-165 | WUSCHEL-related homeobox 6-like | ||||
Swissprot | Q10M29 | 1e-110 | WOX6_ORYSJ; WUSCHEL-related homeobox 6 | ||||
TrEMBL | A0A2S3IR14 | 1e-164 | A0A2S3IR14_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03448.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 3e-32 | WUSCHEL related homeobox 11 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG602300.1.p |
Publications ? help Back to Top | |||
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