PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG600600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 357aa    MW: 38946 Da    PI: 9.3971
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG600600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.9e-5491361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL++++++  +++ ++i++vdiyk++PwdLp++++ ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+dk
  Pavir.9NG600600.1.p   9 LPPGFRFHPTDEELILHYLRNRAANAGCPV-DIIADVDIYKFDPWDLPSRARYGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDK 97 
                          79****************************.99***************999999************************************ PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++  +ge vg+kk Lvfykgr pkg+kt+W+mheyrl
  Pavir.9NG600600.1.p  98 PIHRGaTGESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 136
                          ***9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-653169IPR003441NAC domain
PROSITE profilePS5100562.1239169IPR003441NAC domain
PfamPF023658.2E-2810136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MIMANPAMLP PGFRFHPTDE ELILHYLRNR AANAGCPVDI IADVDIYKFD PWDLPSRARY  60
GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH RGATGESVGV KKALVFYKGR  120
PPKGTKTNWI MHEYRLAADA HAAHTYRPMK FRNTSMRLDD WVLCRIYKKT SHVSPMAVPP  180
LSVHEQDEPC GFDENRPYAA SSAGMLVQPA AYPVLHDAPR RMPRIPSLTE LFNDPSLAHF  240
FEDGGVPDMA RLDQHHHHQH GGATLLGHPV TSQLLINNGN SGLPGQMDSS ASTSAAGDGA  300
AAGSRKRASE TSTSAGTAPA AKKPNGSCFG ATFQIGNGLQ GSLGHHMLLH SNMGMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-72917117167NO APICAL MERISTEM PROTEIN
1ut4_B2e-72917117167NO APICAL MERISTEM PROTEIN
1ut7_A2e-72917117167NO APICAL MERISTEM PROTEIN
1ut7_B2e-72917117167NO APICAL MERISTEM PROTEIN
3swm_A2e-72917120170NAC domain-containing protein 19
3swm_B2e-72917120170NAC domain-containing protein 19
3swm_C2e-72917120170NAC domain-containing protein 19
3swm_D2e-72917120170NAC domain-containing protein 19
3swp_A2e-72917120170NAC domain-containing protein 19
3swp_B2e-72917120170NAC domain-containing protein 19
3swp_C2e-72917120170NAC domain-containing protein 19
3swp_D2e-72917120170NAC domain-containing protein 19
4dul_A2e-72917117167NAC domain-containing protein 19
4dul_B2e-72917117167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG600600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280290.0KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798103.10.0NAC domain-containing protein 10-like
TrEMBLA0A2S3IQZ70.0A0A2S3IQZ7_9POAL; Uncharacterized protein
STRINGPavir.Ia03443.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-83NAC-like, activated by AP3/PI