PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG485500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 84aa MW: 9530.15 Da PI: 12.1253 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 67.5 | 2.3e-21 | 27 | 65 | 2 | 40 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkg 40 prlrWtp+LH+rFv+a+++LGG++kAtPk++l+lm+v + Pavir.9NG485500.1.p 27 PRLRWTPDLHRRFVHAIHRLGGQHKATPKRVLQLMGVRD 65 8***********************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 23 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.55E-8 | 25 | 65 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-15 | 27 | 65 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-6 | 28 | 68 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 84 aa Download sequence Send to blast |
MMTVERAMAG RERVEGAARQ YNRSKVPRLR WTPDLHRRFV HAIHRLGGQH KATPKRVLQL 60 MGVRDCGASP YPMSRAIFRC TGT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG485500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685487.1 | 6e-36 | putative Myb family transcription factor At1g14600 | ||||
Swissprot | Q700D9 | 1e-16 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | K4AK11 | 7e-32 | K4AK11_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia02879.1.p | 2e-55 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7610 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14600.1 | 4e-19 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG485500.1.p |