PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG448500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 228aa    MW: 24310.1 Da    PI: 5.1436
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG448500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.1e-1078123856
                          HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                          rr   NReA r++R++Kka  + Lee+vk+L a N++L     +l++++
  Pavir.9NG448500.1.p  78 RRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLL---GRLQDHA 123
                          67778*******************************999...5555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-1569139No hitNo description
SMARTSM003386.8E-1071138IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.78373139IPR004827Basic-leucine zipper domain
PfamPF077161.4E-1473128IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-876132No hitNo description
CDDcd146866.83E-1278129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDDGADLPCQ LLFSHPEVPG SFDELFNSAT TTCTHTHSCN PPGPSGPMHT HTCLHTHTQV  60
LAGGAEGDDA REDPAKPRRP LGNREAVRKY REKKKAHAAF LEEEVKKLRA ANQQLLGRLQ  120
DHAALEAEVM RLRSLLLDVR GKIDAEVSAS PFQKPCSVGS VVSADPAPCF NGNSEVAGAW  180
EESSIPSAAD CRIDEGGGVS REIDVPEGLH HSMDVVANFV GSDSLAE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.230150.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG448500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805845.11e-135basic leucine zipper 23-like isoform X1
RefseqXP_025805846.11e-135basic leucine zipper 23-like isoform X1
RefseqXP_025805847.11e-135basic leucine zipper 23-like isoform X1
RefseqXP_025805848.11e-135basic leucine zipper 23-like isoform X1
RefseqXP_025805852.11e-136basic leucine zipper 23-like isoform X4
SwissprotQ8GTS23e-52BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A2S3HAU81e-134A0A2S3HAU8_9POAL; Uncharacterized protein
STRINGPavir.J00911.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38313675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-45bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]