PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG442700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 149aa MW: 16151.6 Da PI: 11.6244 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.1 | 2.3e-10 | 114 | 135 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ++Dg+ WrKYGqK+++gs++pr Pavir.9NG442700.1.p 114 MEDGFVWRKYGQKDIHGSKHPR 135 58*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-8 | 107 | 135 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 9.603 | 109 | 135 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-8 | 111 | 136 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0043 | 114 | 148 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-6 | 115 | 135 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAAPATAASE LVARGRKSAA SLRGMLGPQP AVRAGATPHG LQLQDLVEQI LNCCDRALAA 60 LRAATEDAAA ASSARKRRKP EQGAVPIPAT ISNSKRMRLR GGERATRAEK RRTMEDGFVW 120 RKYGQKDIHG SKHPRWRPVL NSDYKIMI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG442700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809543.1 | 5e-52 | probable WRKY transcription factor 38 | ||||
TrEMBL | A0A3L6R9N8 | 2e-56 | A0A3L6R9N8_PANMI; WRKY transcription factor | ||||
STRING | Pavir.J00720.1.p | 1e-103 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4663 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 2e-07 | WRKY DNA-binding protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG442700.1.p |