PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG435900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 248aa    MW: 26065.3 Da    PI: 10.3838
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG435900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.1e-12168218555
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                          +r++r++kNRe+A rsR RK+a+++eLe  v +Le+e  +L  e ee +++
  Pavir.9NG435900.1.p 168 QRQKRMIKNRESAARSRDRKQAYVAELESQVTQLEEEQAELLTEQEERRQK 218
                          89*************************************999887766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-6164226IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.691166218IPR004827Basic-leucine zipper domain
PfamPF001702.5E-11167217IPR004827Basic-leucine zipper domain
CDDcd147074.82E-17168214No hitNo description
SuperFamilySSF579595.13E-11169217No hitNo description
Gene3DG3DSA:1.20.5.1708.3E-13169222No hitNo description
PROSITE patternPS000360171186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MASSRVMASS SPPQPAGAGS SSDLARFTSG SGIGSMNMDD IIRNIYGPEA VAGGGAAEPS  60
PAPAAAARRT SEEVWKEISA TGGLSVPALP PPPPAAGGGS RARGGAAEMT LEDFLARDSG  120
ARAVAAAEGN MALGFPVPDG DAAGAGAGAA RGPRKRALVN PADRAVMQRQ KRMIKNRESA  180
ARSRDRKQAY VAELESQVTQ LEEEQAELLT EQEERRQKRL KELMERAFPV IRKKLSRDLR  240
RTNSMEW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.241690.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00648PBMTransfer from LOC_Os05g36160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG435900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961953.11e-113G-box-binding factor 4
SwissprotQ0JHF15e-57BZP12_ORYSJ; bZIP transcription factor 12
TrEMBLA0A3L6SVU81e-113A0A3L6SVU8_PANMI; G-box-binding factor 4-like
STRINGPavir.J06257.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26653786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.13e-13bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]