PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG400000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 205aa MW: 21424.1 Da PI: 8.2206 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 57.9 | 2.1e-18 | 133 | 185 | 3 | 55 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +++r +r++kNRe+A rsR+RK+a++ eLe++vk L++eN++L+ + e+l+ Pavir.9NG400000.1.p 133 SDRRKKRMIKNRESAARSRARKQAYVRELEQEVKLLQQENESLRVKYEQLRVS 185 689******************************************99999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.1E-14 | 131 | 195 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-15 | 133 | 186 | No hit | No description |
PROSITE profile | PS50217 | 12.082 | 133 | 183 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.1E-16 | 134 | 185 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.17E-21 | 135 | 182 | No hit | No description |
SuperFamily | SSF57959 | 4.19E-13 | 135 | 184 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 138 | 153 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAAAMDLEDD EDFWGNTASS PSASPPGSLA AAAVSPCGAF ISTQLSLNSR LHLLSTAGGS 60 SALGAGIYAA DDGRHHMDLG GGFRNAAASP APFFSAYNPA AGAGTARSVL EDEMCLGPDA 120 AAATWAGAGV GGSDRRKKRM IKNRESAARS RARKQAYVRE LEQEVKLLQQ ENESLRVKYE 180 QLRVSVEVAV PVKKTLQRMP SAPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG400000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF093789 | 2e-71 | EF093789.1 Zea mays delayed flowering1 (DLF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803630.1 | 1e-109 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | A0A2S3H1W2 | 1e-108 | A0A2S3H1W2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04490.1.p | 1e-147 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9764 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 4e-16 | basic region/leucine zipper motif 27 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG400000.1.p |