PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G17770.2 | ||||||||
Common Name | ATBZIP27, BZIP27, FDP, T17A5.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 195aa MW: 22007.9 Da PI: 9.7223 | ||||||||
Description | basic region/leucine zipper motif 27 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.3 | 2.3e-15 | 125 | 174 | 4 | 53 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 ++r +r++kNRe+A rsR+RK+a++ eLe +++ L++eN +Lk + e+lk AT2G17770.2 125 DRRYKRMIKNRESAARSRARKQAYTNELELEIAHLQTENARLKIQQEQLK 174 7899***************************************9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-11 | 122 | 186 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.978 | 124 | 174 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.0E-13 | 125 | 174 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.45E-26 | 126 | 180 | No hit | No description |
SuperFamily | SSF57959 | 2.25E-11 | 126 | 174 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.9E-13 | 126 | 174 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 129 | 144 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEEVWKEINL GSLHYHRQLN IGHEPMLKNQ NPNNSIFQDF LNMPLNQPPP PPPPPSSSTI 60 VTALYGSLPL PPPATVLSLN SGVGFEFLDT TENLLASNPR SFEESAKFGC LGKKRGQDSD 120 DTRGDRRYKR MIKNRESAAR SRARKQAYTN ELELEIAHLQ TENARLKIQQ EQLKIAEATQ 180 NQVKKTLQRS STAPF |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 264620_at | 0.0 | ||||
Expression Atlas | AT2G17770 | - | ||||
AtGenExpress | AT2G17770 | - | ||||
ATTED-II | AT2G17770 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT. | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G17770.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT2G17770, AT4G35900 | |||||
IntAct | Search Q7PCC6 |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Slightly delayed flowering. In the plants missing both FD and FDP, fd-2 fdp-1 strongly delayed flowering, even in the presence of high FT levels. {ECO:0000269|PubMed:23543784}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G17770 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY500342 | 0.0 | AY500342.1 Arabidopsis thaliana At2g17770 mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001189545.1 | 1e-143 | basic region/leucine zipper motif 27 | ||||
Swissprot | Q7PCC6 | 1e-145 | FDP_ARATH; bZIP transcription factor 27 | ||||
TrEMBL | A0A178VTS7 | 1e-130 | A0A178VTS7_ARATH; FDP | ||||
STRING | AT2G17770.2 | 1e-143 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 | Representative plant | OGRP8739 | 6 | 10 |
Link Out ? help Back to Top | |
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Phytozome | AT2G17770.2 |
Entrez Gene | 816286 |
iHOP | AT2G17770 |
wikigenes | AT2G17770 |