PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG248800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 309aa    MW: 32060.4 Da    PI: 9.0173
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG248800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY80.93.9e-254593654
                YABBY  6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54
                         +seq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sll+vn++   
  Pavir.9NG248800.1.p 45 ASEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLTVNMRGLL 93
                         79****************************************9998655 PP
2YABBY131.41.2e-40192257106170
                YABBY 106 deevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          +e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Pavir.9NG248800.1.p 192 KEPSPRANPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 257
                          66788988879*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.1E-6345257IPR006780YABBY protein
SuperFamilySSF470956.55E-8196251IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-4206249IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSSSSSSSSA ASAAAGFPPS PPPLLVENLP PLHQQLTPVA AAPPASEQLC YVHCHFCDTV  60
LVVSVPTSSL FKTVTVRCGH CSSLLTVNMR GLLFPGTPTT NTAAAAPTEV TTAPPPPASS  120
ANNGQFHFPH SLNLAPNPPH QSLLDEISSA NPSLQLLEQH GLGGLIPGGR NAAAPAPAPP  180
PPPAAAGNKG AKEPSPRANP VVNRPPEKRQ RVPSAYNRFI KDEIQRIKAG NPDISHREAF  240
SAAAKNWAHF PHIHFGLMPD HQQGLKKTSL LPQDHHQRKD GLLIKDGLYA AAAAAAAAAA  300
ANMGVAPY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG248800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3302281e-179AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796914.11e-164protein YABBY 3-like
SwissprotQ8L5561e-102YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A2S3IKW51e-163A0A2S3IKW5_9POAL; Uncharacterized protein
STRINGPavir.Ia02088.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-41YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]