PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG209100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 24448.6 Da PI: 9.0106 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+++ L H ++H Pavir.9NG209100.1.p 82 HRCSVCGKAFPSHQALGGHKSSH 104 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.593 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.67E-10 | 82 | 104 | No hit | No description |
Pfam | PF13912 | 6.0E-11 | 82 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.67E-10 | 144 | 171 | No hit | No description |
Pfam | PF13912 | 3.7E-13 | 148 | 173 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 149 | 171 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 149 | 171 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 151 | 171 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAAMVGVALD APATPWTLPE EGAVSAREGA ADGWARRKRS RSRRHLRRVG AAPTEEEHLA 60 LCLLMLARGQ RDARAPAPQQ EHRCSVCGKA FPSHQALGGH KSSHRARPPA AAPTPAAEEP 120 AAAAPSASPA ASSSTSGAAG SSGSGGRVHE CSVCRKTFPT GQALGGHKRC HYAGAAGATT 180 TNVASTSAGL MSCRGFDLNV PALPDIIATG DRCVPAAEEE EEVLSPLAFK KPRLMIPA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 42 | KRSRSR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}. | |||||
Uniprot | TISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG209100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794414.1 | 8e-97 | zinc finger protein 1-like | ||||
Swissprot | Q42430 | 2e-49 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A3L6TLR6 | 1e-102 | A0A3L6TLR6_PANMI; Zinc finger protein 1-like | ||||
STRING | Pavir.J15423.1.p | 1e-122 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 1e-32 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG209100.1.p |