PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG207900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 291aa    MW: 30891.5 Da    PI: 7.0752
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG207900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.83.4e-4271061100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvh++FGasnv+kll++lp+ +reda++sl+yeAear+rdPvyG+v+ i+ lq +++q+
  Pavir.9NG207900.1.p   7 PCAACKLLRRKCTQGCVFAPYFPPDNPAKFANVHRVFGASNVSKLLNELPQAQREDAVNSLAYEAEARLRDPVYGCVSYISVLQLRIKQA 96 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++la++++e
  Pavir.9NG207900.1.p  97 REDLAAARKE 106
                          *****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6446107IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFANVH RVFGASNVSK LLNELPQAQR  60
EDAVNSLAYE AEARLRDPVY GCVSYISVLQ LRIKQAREDL AAARKELAGY IGPAAFAPFV  120
APPQYHHHHH QYAGVPLAAG GMGLGVGFAP PQHGHGHPHH QQIMVQHQHQ HLHHHQQMAE  180
AQQLAAAVEV AREQDLMMRQ AAAYAHAVPG SSAGATVAAV PPDAVPYEGG FLFQQQQSPP  240
SQAQTAVALT YQMEQSPPPS SSGQSHPEVS HQQNTDGSDE GSGGGAVPPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-4841108114LOB family transfactor Ramosa2.1
5ly0_B5e-4841108114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG207900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704292.11e-147LOB domain-containing protein 6
TrEMBLA0A2T7C3R61e-147A0A2T7C3R6_9POAL; Uncharacterized protein
STRINGPavir.J09541.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-58ASYMMETRIC LEAVES 2-like 1