PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG205200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 346aa MW: 39566.5 Da PI: 10.1127

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG205200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.4e-17	44	142	4	100
E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 4 vltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 +++ps+v ++ lv+p+++a +h +k++ ++l+ ++++W k+ +rk + ++++ + W++Fv++n+++egD+++F+ + + ++ Pavir.9NG205200.1.p 44 IMKPSNVKSQyPYLVIPNDYAVAHFPDKNQ--FVKLQRpGKNKKWHPKFYIRKDRAAHMFVGHWSDFVHDNHVREGDICIFQPMkNAgTK 131 57777777776679********766555..5899884566***77999999*********************66255899 PP E..EEEEE-SS CS B3 90 felvvkvfrks 100 f+++v+++rks Pavir.9NG205200.1.p 132 FTMTVHLIRKS 142 99*999985 PP
2	B3	53.4	4.7e-17	256	344	11	99
HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++++l + k++a+e+ +g e +tltl ++ W+v++ +++s + +lt GW++Fv++n+L++ D+++F+ +++++ +++v + Pavir.9NG205200.1.p 256 NSTCILAFGKQYATEYlpDG---E-QTLTLLRkGKNTIWKVRMVPrSGSSHGQMLTVGWRDFVQENRLEVEDICLFQQMDDKRLTMTVDI 341 467999999*****5432...2.3555555277799*654555555*********************9999******* PP E-S CS B3 97 frk 99 +r+ Pavir.9NG205200.1.p 342 IRH 344 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.7E-21	34	142	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.16E-20	36	143	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.59E-19	41	137	No hit	No description
SMART	SM01019	1.2E-10	41	142	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.392	42	142	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-15	42	141	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-19	234	339	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-17	237	343	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.11E-14	242	343	No hit	No description
SMART	SM01019	4.2E-7	244	345	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.673	246	345	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-15	256	344	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MILKTNPEPD YVLSRLSNLS AEQEEKVEEL INEIRPEIRV YVAIMKPSNV KSQYPYLVIP 60 NDYAVAHFPD KNQFVKLQRP GKNKKWHPKF YIRKDRAAHM FVGHWSDFVH DNHVREGDIC 120 IFQPMKNAGT KFTMTVHLIR KSKVDMLDEN RNCPGGVSSS RGRMSKKVND HKTVSSSDGR 180 PTAKVTLKIR VKEEPPHQGP LESDDSGQPS KYPYILSGRA HLNGEQKKKV KEIVRSIQSR 240 VPIYVAILNK SNVGINSTCI LAFGKQYATE YLPDGEQTLT LLRKGKNTIW KVRMVPRSGS 300 SHGQMLTVGW RDFVQENRLE VEDICLFQQM DDKRLTMTVD IIRHG*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MILKTNPEPD YVLSRLSNLS AEQEEKVEEL INEIRPEIRV YVAIMKPSNV KSQYPYLVIP  60
NDYAVAHFPD KNQFVKLQRP GKNKKWHPKF YIRKDRAAHM FVGHWSDFVH DNHVREGDIC  120
IFQPMKNAGT KFTMTVHLIR KSKVDMLDEN RNCPGGVSSS RGRMSKKVND HKTVSSSDGR  180
PTAKVTLKIR VKEEPPHQGP LESDDSGQPS KYPYILSGRA HLNGEQKKKV KEIVRSIQSR  240
VPIYVAILNK SNVGINSTCI LAFGKQYATE YLPDGEQTLT LLRKGKNTIW KVRMVPRSGS  300
SHGQMLTVGW RDFVQENRLE VEDICLFQQM DDKRLTMTVD IIRHG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17088	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG205200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628609.1	1e-102	B3 domain-containing protein Os03g0620400 isoform X1
Refseq	XP_015628610.1	1e-102	B3 domain-containing protein Os03g0620400 isoform X2
Refseq	XP_015628611.1	1e-102	B3 domain-containing protein Os03g0620400 isoform X2
Swissprot	Q851W5	1e-103	Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBL	A0A3L6TV98	1e-179	A0A3L6TV98_PANMI; Uncharacterized protein
STRING	Pavir.Ia01274.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	4e-10	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG205200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]