PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG197400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 334aa    MW: 37851.7 Da    PI: 9.8259
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG197400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19e-2028116198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkvl     + ++ lvlp k a ++ gkk++s  ++le++sg +++v++   k+sgr  l++GW++Fv+a+gLk  Df+vFk+d+    
  Pavir.9NG197400.1.p  28 FFKVL--VGDF-HKKLVLPDKLALHFRGKKARS--IKLESRSGHTFNVQV--AKNSGRLELQSGWESFVSAHGLKMMDFLVFKYDE--IS 108
                          56666..3334.455********9999998886..***************..*******************************975..44 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                          +++v +f+
  Pavir.9NG197400.1.p 109 QMKVLIFD 116
                          45888887 PP
2B346.66e-152663313699
                          EEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  36 ltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          l + + +g+sWev +++   r++++ + l kGWk+Fv++n+L+ gD ++F+  ++++ +++v+++r+
  Pavir.9NG197400.1.p 266 L-MLHCHGKSWEVMCRVqvrRGRRNFHNLCKGWKRFVRDNNLRLGDLCLFEPLETKKYTMNVHIVRE 331
                          3.46679********9976455555599***********************88889999***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-2223123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-2224130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5225118IPR003340B3 DNA binding domain
CDDcd100174.52E-1926116No hitNo description
PfamPF023622.1E-1728116IPR003340B3 DNA binding domain
SMARTSM010192.3E-928118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-19227331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-18227331IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-15235330No hitNo description
SMARTSM010190.024236332IPR003340B3 DNA binding domain
PfamPF023628.9E-13245331IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646271332IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRKPGNGCKE RGACHFWNAY TDDQDKHFFK VLVGDFHKKL VLPDKLALHF RGKKARSIKL  60
ESRSGHTFNV QVAKNSGRLE LQSGWESFVS AHGLKMMDFL VFKYDEISQM KVLIFDPTGC  120
EKVSPCFVTE NAISGRQMKE ESIGTSSNYT NLPMKTPLVK KKARKQRDGC KIANISSSCS  180
PSESSGGSAS SDEHELHSVP SCILPRGTSL TNVQKKQLKE KVGAICSEIP IYGCVMKKSN  240
VYGEQQCMGF SGEYSEACLP FRERTLMLHC HGKSWEVMCR VQVRRGRRNF HNLCKGWKRF  300
VRDNNLRLGD LCLFEPLETK KYTMNVHIVR EKH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG197400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679254.11e-171putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A2T7C3Q10.0A0A2T7C3Q1_9POAL; Uncharacterized protein
STRINGPavir.Ia01199.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-27B3 family protein