PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG194800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 348aa    MW: 37313.2 Da    PI: 10.4884
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG194800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31281338359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Pavir.9NG194800.2.p 281 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSMLIVTYEGEHNHT 338
                          9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-18232277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.6E-34267338IPR003657WRKY domain
PROSITE profilePS5081129.998274340IPR003657WRKY domain
SuperFamilySSF1182907.06E-27277338IPR003657WRKY domain
SMARTSM007741.6E-37279339IPR003657WRKY domain
PfamPF031068.2E-27281337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEVEEANRA AVESCHRVLA LLSKPHDPAQ ARSIALGTDE ACAKFRKVVS LLSNGGVGVG  60
GEAGPSGTSG SHPRAKVVSR RQNPGFLTQK GFLDSNTPVV VLNSAHPSPS SAQVYPRTGA  120
LDAQSIHPLG GPPKLVQPLS AHFQFGNVSS RYQFPHQQQQ KLQAEMFKRS NSGINLKFDS  180
TSGTGTMSSA RSFLSSLSMD GSVASLNGKS SSFHLIGGPA MSDPVNAQQA PRRRCTGRGE  240
DGTGKCAVTG RCHCSKRRKL RVKRSIKVPA ISNKIADIPP DEYSWRKYGQ KPIKGSPHPR  300
GYYKCSSVRG CPARKHVERC VDDSSMLIVT YEGEHNHTRM PTQSAQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21272341775WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.69911e-146callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG194800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795418.10.0protein WRKY1-like isoform X2
SwissprotQ93WU67e-94WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A2S3IK190.0A0A2S3IK19_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3K40.0A0A2T7C3K4_9POAL; Uncharacterized protein
STRINGPavir.Ia01239.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-75WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]