PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG181900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21417.4 Da PI: 8.9836 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 238.6 | 1.3e-73 | 6 | 165 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ l++++h + ++e+ kv++ ++++n++++ +s Pavir.9NG181900.1.p 6 APPLEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIPSLPVQNH-----SQLVQENFKVHNISFTENYSEYAPTS 90 56679*****************************************************9.....566999******************** PP YABBY 94 tsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++ ++ ++ +++++ + +r PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl Pavir.9NG181900.1.p 91 SKYRMPMMfsTKGDQDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 165 ***99998744445555555....89***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-70 | 9 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.09E-7 | 109 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.1E-4 | 111 | 159 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 4.17E-4 | 119 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSAQIAPPLE HVCYVHCNFC NTILAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLIPSLP 60 VQNHSQLVQE NFKVHNISFT ENYSEYAPTS SKYRMPMMFS TKGDQDHMLH VRAPEKRQRV 120 PSAYNRFIKE EIRRIKASNP AISHREAFST AAKNWAHFPN IHFGLGTHES SKNLDEAIGA 180 AGGPQKVQDL Y* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5951 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG181900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795818.1 | 1e-130 | protein YABBY 2-like isoform X2 | ||||
Swissprot | Q10FZ7 | 1e-107 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2T7C330 | 1e-130 | A0A2T7C330_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01130.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-56 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG181900.1.p |