PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG174500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 724aa    MW: 77691.1 Da    PI: 7.0337
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG174500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.31.8e-14424463241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          ++k+C+CkkskClk+YC Cfaa+++Cs  C+C++C N+++
  Pavir.9NG174500.2.p 424 SCKRCSCKKSKCLKLYCTCFAAKVYCSGLCSCQGCLNNHT 463
                          589**********************************987 PP
2TCR50.54e-16509548140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnC+ks+ClkkYCeCf++g+ Cs +C+C +CkN+ 
  Pavir.9NG174500.2.p 509 RHKRGCNCRKSSCLKKYCECFQSGVGCSMSCRCASCKNSF 548
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-12423464IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.891424549IPR005172CRC domain
PfamPF036382.3E-10426461IPR005172CRC domain
SMARTSM011145.3E-14509550IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11511547IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MDPPESPPAP AGRPPSAAVS LYEDSPVFDF INSLSPIATP KLLGSAQNVQ LFKSSDLVPA  60
SSIFTSPQVN PQKEYKPGTR DGYVQLSQGL SPNCQTNQIG ISSCYGSPTI ASEKCSPSEY  120
ATILSQPIPL GSEILGDAKK QDTDDKVDHS PDMGQIKLSS TCYDQNGVDQ LDSSTSGRNV  180
QENELTKQYN DDQAACSLSH LISRSGTGDG VMSKLDLSLE AQQLSWKLRS DVIFSKSIMP  240
MAQGNLEDSR RKLLDGSTGC YIQSAADDTH VYYAGAAEGA ATNHDPQMLP GVIQSQLVSN  300
EYFFDAFKVP SDGMALSEHH CGGMNRRSLF NEKVQTSDLS GQSVSNLHHT NICGDNYLKP  360
SRSPVYALPV SCSETGLYSS EVNTLIHDDH SSQKTMPSAD ESCQESYKKK SLVRRKLQNG  420
DGGSCKRCSC KKSKCLKLYC TCFAAKVYCS GLCSCQGCLN NHTHEETVSC IRKRTESLNP  480
LAFAPTVTRA CDSGSDFGDD SNNTPASARH KRGCNCRKSS CLKKYCECFQ SGVGCSMSCR  540
CASCKNSFGQ SKGVLLLTTE KMEKEAKSKG TRSKEEKLAF DKQVVISQSG DPPSTEDLFA  600
TPSLEPCRSS NLLPSTCSEP PVSTAGCSSQ LRNSQSPMKA DVLLSPSETC AMEPILVDGL  660
SNIQEVSSSC TTRVKVVSPN KKRVSPLQTG PGLSPIGRSG RKLVLKSIPS FPSLTGDADS  720
EPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1242654612120Protein lin-54 homolog
5fd3_B3e-1242654612120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG174500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797028.10.0uncharacterized protein LOC112877044 isoform X2
TrEMBLA0A2T7C3D30.0A0A2T7C3D3_9POAL; Uncharacterized protein
STRINGSi034711m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-52Tesmin/TSO1-like CXC domain-containing protein