PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG174500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 759aa    MW: 81324.2 Da    PI: 6.976
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG174500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.9e-14459498241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          ++k+C+CkkskClk+YC Cfaa+++Cs  C+C++C N+++
  Pavir.9NG174500.1.p 459 SCKRCSCKKSKCLKLYCTCFAAKVYCSGLCSCQGCLNNHT 498
                          589**********************************987 PP
2TCR50.54.2e-16544583140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnC+ks+ClkkYCeCf++g+ Cs +C+C +CkN+ 
  Pavir.9NG174500.1.p 544 RHKRGCNCRKSSCLKKYCECFQSGVGCSMSCRCASCKNSF 583
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-12458499IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.891459584IPR005172CRC domain
PfamPF036382.5E-10461496IPR005172CRC domain
SMARTSM011145.3E-14544585IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-11546582IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MDPPESPPAP AGRPPSAAVS LYEDSPVFDF INSLSPIATP KLLGSAQNVQ LFKSSDLVPA  60
SSIFTSPQVN PQKEYKPGTR DGYVQLSQGL SPNCQTNQIG ISSCYGSPTI ASEKCSPSEY  120
ATILSQPIPL GSEILGDAKK QDTDDKVDHS PDMGQIKLSS TCYDQNGVDQ LDSSTSGRNV  180
QENELTKQYN DDQAACSLSH LISRSGTGDG VMSKLDLSLE AQQLSWKLRS DVIFSKSIMP  240
MAQGNLEDSR RKLLDGSTGC YIQSAADDTH VYYAGAAEGA ATNHDPQMLP GVIQSQLVSN  300
EYFFDAFKVP SDGMALSEHH CGGMNRRSLF NEKVQTSDLS GQSVSNLHHT NICGDNYLKP  360
SRSPVYALPG IGLHLNSVVS NASNNMPFTS NPPLPPEHNS PPTIVSCSET GLYSSEVNTL  420
IHDDHSSQKT MPSADESCQE SYKKKSLVRR KLQNGDGGSC KRCSCKKSKC LKLYCTCFAA  480
KVYCSGLCSC QGCLNNHTHE ETVSCIRKRT ESLNPLAFAP TVTRACDSGS DFGDDSNNTP  540
ASARHKRGCN CRKSSCLKKY CECFQSGVGC SMSCRCASCK NSFGQSKGVL LLTTEKMEKE  600
AKSKGTRSKE EKLAFDKQVV ISQSGDPPST EDLFATPSLE PCRSSNLLPS TCSEPPVSTA  660
GCSSQLRNSQ SPMKADVLLS PSETCAMEPI LVDGLSNIQE VSSSCTTRVK VVSPNKKRVS  720
PLQTGPGLSP IGRSGRKLVL KSIPSFPSLT GDADSEPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1246358114120Protein lin-54 homolog
5fd3_B4e-1246358114120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG174500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797027.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A2T7C3E10.0A0A2T7C3E1_9POAL; Uncharacterized protein
STRINGSi034711m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-55Tesmin/TSO1-like CXC domain-containing protein