PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG161900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 306aa MW: 31917.5 Da PI: 4.6818

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG161900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2.1e-09	37	60	24	48
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia++++ gRt++++k++w+++l Pavir.9NG161900.1.p 37 WSLIASHLP-GRTDNEIKNYWNSHL 60 *******.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.25E-7	35	65	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-7	36	60	IPR001005	SANT/Myb domain
CDD	cd00167	5.34E-7	37	60	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-12	37	60	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.632	37	60	IPR017877	Myb-like domain
Pfam	PF06640	1.6E-83	78	305	IPR010588	Myb-related protein P, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAAAAWSMSD GRRRSGAATA GRWHFPSLQR NPDRLGWSLI ASHLPGRTDN EIKNYWNSHL 60 SRQIHTYRRT YTAGPDDTIT VDISKLHSAE KRRGGRTPGR SPKSAATATS GGSKARSKQQ 120 LPGPDKEPEP AGSAEAKGAS GPVAAAAASS PRHSDGARSA VVDPDQNQPG SSSGVAGGGG 180 ANTPEGPWSE DATGSLVLDP AAMEFGGLWE AESEMEALLS SGGDIGSGHD PLTGFDAVAE 240 AQVDDLLDMD WDGFAAHLWG QPAAPCHQQG DNQPDEPQAA AAGCNNHQED DELESFATWL 300 LSDSF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG161900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY860968	6e-63	AY860968.1 Sorghum bicolor yellow seed1 (y1) gene, y1-rr allele, complete cds; and y2 pseudogene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797897.1	1e-142	myb-related protein P-like
Swissprot	P27898	1e-40	MYBP_MAIZE; Myb-related protein P
TrEMBL	A0A3L6TPG0	1e-148	A0A3L6TPG0_PANMI; Myb-related protein P-like
STRING	Pavir.Ia03786.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	3e-14	myb domain protein 12

Link Out ? help Back to Top
Phytozome	Pavir.9NG161900.1.p

Publications ? help Back to Top
Robbins ML,Sekhon RS,Meeley R,Chopra S A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics, 2008. 178(4): p. 1859-74 [PMID:18430921] Sidorenko L,Chandler V RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics, 2008. 180(4): p. 1983-93 [PMID:18845841] Robbins ML,Wang P,Sekhon RS,Chopra S Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism. PLoS ONE, 2009. 4(12): p. e8231 [PMID:20011605] Rhee Y,Sekhon RS,Chopra S,Kaeppler S Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics, 2010. 186(3): p. 843-55 [PMID:20823340] Morohashi K, et al. A genome-wide regulatory framework identifies maize pericarp color1 controlled genes. Plant Cell, 2012. 24(7): p. 2745-64 [PMID:22822204]