PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG152100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 750aa MW: 79985 Da PI: 6.9632 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 309 | 329 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Pavir.9NG152100.2.p 309 PCPDFRK-GVCRRGDMCEYAHG 329 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 7.47E-7 | 53 | 169 | No hit | No description |
PROSITE profile | PS50297 | 15.512 | 91 | 166 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.24 | 91 | 121 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 3.73E-13 | 91 | 168 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.0E-15 | 92 | 170 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 2.8E-8 | 92 | 150 | No hit | No description |
SMART | SM00248 | 0.49 | 126 | 158 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.808 | 126 | 161 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.1E-5 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 309 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 337 | 367 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 339 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MMNSMPISAS PAAGIDGGAV AAGTPRKNAT AAAAVAEMAR HLTVDTDDAF AGLLELAADD 60 DAEGLRRALE RAPPAAADEA GLWYGRRKVL EHRTPLMVAA TYGSLAALRL LVSLPSVDVN 120 RRSGTDGTTA LHCVASGGSR TVVEAVKLLL GAGADADATD DSGRRPADVI SVPPKMFDAK 180 FALQDLLGCP KPEHGMLRVV TRSTNSISSP VSSPTAEDAR SPSAAVMMTT KFADLPRVAT 240 SEKKEYPVDP SLPDIKNSIY ASDEFRMYSF KIRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PDFRKGVCRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH 360 TTDELRPLYV STGSAVPSPR ASATAAMEMA AAMGLMPGSP SSVSAVMSPF TPPMSPSGNG 420 MPPSLGWQQP NVPTLHLPGS SLQSSRLRTS LSARDMPADD YSLMQDLDSQ LMNDLCYSRL 480 SSSTGNHSAR TKSLNPSNLD DLFSAEMVSS PRYSNADQGA MFSPSHKAAI LNQFQQQQQA 540 LLSPINTGVY SPKAMDNQQL PSHSSLLQAS LGISSPGRMS PRCVESGSPM NSHLAAALAQ 600 REKQQQQTMR SLSSRDLGPS AARASALVGS PLSSSWSKWG SPSGTPDWGV NGEELGKLRR 660 SSSFELRFGG DDPDLSWVHT LVKESPPEKQ VTTAESINSV GPSPLMPPGM NNGEGSGLST 720 QLDGHDQAAV IGALLEQMQL DQQIGSLAT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9505 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG152100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794600.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q10EL1 | 0.0 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A2S3IJ35 | 0.0 | A0A2S3IJ35_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7C2E7 | 0.0 | A0A2T7C2E7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04422.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG152100.2.p |
Publications ? help Back to Top | |||
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