PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG136000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 192aa MW: 20392.2 Da PI: 9.9465

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG136000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.9	5.8e-32	9	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ + Pavir.9NG136000.1.p 9 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAV 98 7********************************************9977766******************************** PP DUF260 90 lkaelallkee 100 l+ae +l+++ Pavir.9NG136000.1.p 99 LRAENTALRRQ 109 999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.723	8	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-28	9	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MTGGGSGGAC AVCKHQRRKC EPNCELAAYF PAHRMNDFRA LHLVFGVANL TKLIKANATE 60 AARRRAAETL TWEARWRERD PSEGCYREVS CLRRDNAVLR AENTALRRQL AEQQQLLLWS 120 RAAAAPSANS NMAGGCYNGN AGGNGLVVAV RPPPHAPAAP AAQTMLAYRG VSVCPATANG 180 RKSAPDAPPS P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-18	2	110	4	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-18	2	110	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG136000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU973222	1e-141	EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798343.1	1e-97	LOB domain-containing protein 2-like
TrEMBL	A0A2T7C1Z8	3e-96	A0A2T7C1Z8_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I0Y0	3e-96	A0A2T8I0Y0_9POAL; Uncharacterized protein
STRING	Pavir.J38430.1.p	1e-137	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13044	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	4e-16	LOB domain-containing protein 7

Link Out ? help Back to Top
Phytozome	Pavir.9NG136000.1.p