PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG129100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 233aa    MW: 24231.1 Da    PI: 8.1617
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG129100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.72.4e-271161457
          ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                          +Y+eC++NhAa+lG++a DGC+E++p+   ++++aa+ CaACgCHRnFHR+  
  Pavir.9NG129100.1.p 11 EVYRECMRNHAAKLGTYASDGCCEYTPD---DSQPAAMLCAACGCHRNFHRKAF 61
                         68*************************8...6789****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-221260IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-191359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.1991360IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.9E-211359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.2E-16102176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27103176IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27114175IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEQQYQERPR EVYRECMRNH AAKLGTYASD GCCEYTPDDS QPAAMLCAAC GCHRNFHRKA  60
FLDTAAGAFG GGGGLHGAML TSSPGAPAGY GMHMAMVAAG MGGGGGAHGS PGRRRTRTKF  120
TEEQKERMAR FAERLGWRMP KREPGRAPGD DEVGRFCREI GVTRQVFKVW MHNHKAGGGS  180
GSGGAGAGVA AQTSSSTTRG GVGGVGGGGC MSPVMGGDGE DDEEVRGSEM CM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-181131811779ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG129100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3699060.0AF369906.1 Sorghum bicolor clone BAC10J22 Sbb3766 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798159.11e-112zinc-finger homeodomain protein 11-like
SwissprotA2XLF41e-93ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-93ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A2T8I0V51e-111A0A2T8I0V5_9POAL; Uncharacterized protein
STRINGSb01g010020.11e-104(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-33homeobox protein 22