PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG120800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 591aa MW: 61498.5 Da PI: 6.873

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG120800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9.2e-24	212	255	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Pavir.9NG120800.1.p 212 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 255 69***************************************986 PP
2	QLQ	58.6	1.9e-20	144	179	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 ++FT++Q+ +L++Q+l+yKyLaan P+Pp Ll++i+ Pavir.9NG120800.1.p 144 GPFTPSQWIELEHQALIYKYLAANSPIPPSLLVPIR 179 59*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.1E-11	144	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.295	145	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.3E-15	145	179	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	211	255	IPR014977	WRC domain
Pfam	PF08879	5.0E-20	213	254	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MELGGVVMDA GGGAAELGLL VGGSSRLLKH GRGNAAAGGE EHGWGGRAAK QARTAADAAE 60 AAKAAVAPFL LGSCSPGHGG EQMLSFSSAA ASSCASTAAV AAAAAAVAAD GAMPLYYGTP 120 ASCSGLSSVS LSSSMQGAMA RVRGPFTPSQ WIELEHQALI YKYLAANSPI PPSLLVPIRS 180 SIASSPYPPS YFGTSALGWG SFQLGYSGNA DLEPGRCRRT DGKKWRCSRD AVADQKYCER 240 HMNRGRHRSR KHVEGQPGHA AKAMSAAVAA AAATQPTALA ASGAGATAAG LTVSQHQQPV 300 KSYAAGATDP CSLQYNRELV NKQNENDNMQ DSDNLSMLTS MNTRNPGSLF PFSKQNNPFE 360 VTSSRPEFGL VSSDSLMSSP HSSLENVNVL SSQSLNENQS SASLQHFVDW PRTPAQGGLS 420 WADAEDMQAQ RSQLSISAPM ASSELSSAST SPIQEKLMLS PLKLSREYSP IGLSIAASRD 480 EVSQLEANWA TMFRDSSMGG PLGEVLTKNS NAEARHCLPA PLNLLTDCWD SSPGMESSPV 540 GVLQKTTFGS VSSSTGSSPR MENHGAYDGI SNLRDDLGSI VVNHPSIRLM *

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MELGGVVMDA GGGAAELGLL VGGSSRLLKH GRGNAAAGGE EHGWGGRAAK QARTAADAAE  60
AAKAAVAPFL LGSCSPGHGG EQMLSFSSAA ASSCASTAAV AAAAAAVAAD GAMPLYYGTP  120
ASCSGLSSVS LSSSMQGAMA RVRGPFTPSQ WIELEHQALI YKYLAANSPI PPSLLVPIRS  180
SIASSPYPPS YFGTSALGWG SFQLGYSGNA DLEPGRCRRT DGKKWRCSRD AVADQKYCER  240
HMNRGRHRSR KHVEGQPGHA AKAMSAAVAA AAATQPTALA ASGAGATAAG LTVSQHQQPV  300
KSYAAGATDP CSLQYNRELV NKQNENDNMQ DSDNLSMLTS MNTRNPGSLF PFSKQNNPFE  360
VTSSRPEFGL VSSDSLMSSP HSSLENVNVL SSQSLNENQS SASLQHFVDW PRTPAQGGLS  420
WADAEDMQAQ RSQLSISAPM ASSELSSAST SPIQEKLMLS PLKLSREYSP IGLSIAASRD  480
EVSQLEANWA TMFRDSSMGG PLGEVLTKNS NAEARHCLPA PLNLLTDCWD SSPGMESSPV  540
GVLQKTTFGS VSSSTGSSPR MENHGAYDGI SNLRDDLGSI VVNHPSIRLM *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5986	0.0	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG120800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795429.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2S3IIH7	0.0	A0A2S3IIH7_9POAL; Uncharacterized protein
STRING	Pavir.J29705.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-44	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Pavir.9NG120800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]