PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG084800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 345aa MW: 38671.4 Da PI: 7.2651 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 9.4e-52 | 36 | 164 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++a+ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d+ Pavir.9NG084800.1.p 36 LPGFRFHPTDEELVTFYLRRKVARKPLSI-EIIKEMDIYKHDPWDLPkASTAAGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDR 124 69***************************.89***************557777999********************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl Pavir.9NG084800.1.p 125 PIYSAtnSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 164 ***99878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-56 | 34 | 191 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.966 | 35 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-25 | 37 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MVAKEFGREV ISMGKVKTDG EALIAAGDEE EDEVVLPGFR FHPTDEELVT FYLRRKVARK 60 PLSIEIIKEM DIYKHDPWDL PKASTAAGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT 120 GIDRPIYSAT NSGESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPPAAAT ANSSPSMQEA 180 EVWTICRIFK RNITYKRQQP QQVWRQPVAG GNGLPPADSS SNTGSFESDG GDEYMNCLPA 240 AAPSVPRQHH FSNQMNILNG GGGGGFFRES VHSHQQFQGQ WFNSLPPPAI EQKPQLNSPA 300 MTIAFHQNDQ SLAANDCYKD GYWDEIARFM EVNDPAVFHD CRYA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 37 | 192 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 37 | 192 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 37 | 192 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 37 | 192 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 37 | 192 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 37 | 192 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 37 | 192 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 37 | 192 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 37 | 192 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 37 | 192 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 37 | 192 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 37 | 192 | 22 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 37 | 192 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 37 | 192 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG084800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055579 | 0.0 | BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds. | |||
GenBank | HQ858689 | 0.0 | HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795725.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-84 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2S3IHK9 | 0.0 | A0A2S3IHK9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J26531.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-81 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG084800.1.p |