PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG046400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 32336.3 Da PI: 7.9632 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.4 | 8.3e-06 | 172 | 217 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a n+r r RR+++ +++ L++l+ + +K + a++L +A YI+ L Pavir.9NG046400.1.p 172 ATNKRPRVRREKLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 217 679***********************8.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.449 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-12 | 172 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-8 | 173 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.41E-5 | 174 | 222 | No hit | No description |
SMART | SM00353 | 6.3E-6 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MVKEEEIVAQ AGGRAYMDLL GLGEEDYLLC LSPSSYFSSS VVSTTTTTTS ATPAAAASPT 60 CASYLDPAPA YHHMLSFAGQ EQYHGGDVVF GFQYHGGDQA AIPVAVPQKS SPTTECSSSI 120 SSMSSSPPAT TISAISSPKP QGFKKKGSRS SDQRKAAPAA AVAHAATATG AATNKRPRVR 180 REKLGERIIA LQQLVSPFGK SDTASVLHEA LGYIRFLHDQ VQALSSPYMQ RLPASVHAPA 240 LEGAAGTVVE PPRASDLRSR GLCLVPISCT EHVAGGGHGH GNGADLWSVA ARVENKGAAA 300 GTLPGAGGHP GYLA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG046400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794178.1 | 1e-144 | transcription factor bHLH113-like | ||||
TrEMBL | A0A3L6TPW7 | 1e-152 | A0A3L6TPW7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia00382.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8082 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 3e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG046400.1.p |